Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4668 ATGAAGTTCAACGTTGCGAATCCCACCACTGGTTGCCAGAAGAAGCTGGAAATTGATGATGACCAGAAGCTTCGTGCTTTTTGGGACAAGAGGATCTCTCAAGAGGTTAATGGTGATGCTTTGGGAGAGGAATTCAAAGGCTATGTTTTCAAAATTACTGGAGGGTGTGACAAACAAGGTTTTCCAATGAAGCAAGGAGTGTTAACTCCTGGTCGCGTTCGTCTCTTGCTCCACCGAGGTACTCCTTGTTTCCGAGGACACGGAAGGCGCAATGGAGAGCGAAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGATCTCTCTGTTCTGAACTTGGTGATTGTGAAGAAGGGTGAAAATGATTTGCCAGGCTTGACAGATGTTGAAAAGCCAAGAATGAGGGGTCCCAAGAGAGCTTCCAAGATCCGCAAGCTCTTCAATCTGTCTAAGGAGGATGATGTCAGGAAGTATGTCAACACCTACCGTCGAACTTTCACAACCAAAGCTGGGAAAAAGCAGAGCAAAGCACCAAAGATACAGCGCCTAGTCACTCCCCTGACCCTTCAAAGGAAGAGGGCTAGAATTGCAGACAAGAAGAAAAGGATTGCTAAAGCAAAATCCGAGGCCGCAGAGTACCAAAAACTTCTTGCCTCCAGATTGAAGGAGCAGAGGGACCGCAGAAGTGAGAGTTTGGCTAAGAAGAGATCAAGGCTCTCTACCGCCAAGCCTGTTGCAGCATAG 744 0.4798 MKFNVANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKQSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRLSTAKPVAA* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4668 247 Gene3D - 133 234 - -
Psa1g4668 247 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Psa1g4668 247 PIRSF RPS6e 1 247 IPR014401 GO:0003735|GO:0005840|GO:0006412
Psa1g4668 247 MobiDBLite consensus disorder prediction 219 247 - -
Psa1g4668 247 PANTHER 40S RIBOSOMAL PROTEIN S6 1 243 - -
Psa1g4668 247 Coils Coil 189 216 - -
Psa1g4668 247 MobiDBLite consensus disorder prediction 219 237 - -
Psa1g4668 247 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Psa1g4668 247 PANTHER 40S RIBOSOMAL PROTEIN S6 1 243 IPR001377 GO:0003735|GO:0005840|GO:0006412
Psa1g4668 247 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4668 Psa-Chr1 354686953 354690231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4668 1 247 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 74.297 9.86e-123 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4668 K02991 - sind:105176438 432.18