Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4661 ATGGATGAAAGTTGGGGTGAGGGAAAGAGAAGCTATGAGTATGAAGTAGAAGAGGAAGAAGATGTGAGTTATGGAGATGATGGAAAGAAGAAAAGAGTAGTAGGGAGTGAACATCATGTTAAGAAAGTTTCAAAAGCTGGTGGATCGGTTACACCTTGTTGTCAAGTTGATAACTGTAATGCTGATCTAAGTGGTGGTAAGCAGTATCATAAGCGTCATAAGGTTTGTGAAAACCATTCTAAGGCTCATTCTGTGATCATTTCTGAGATGCAACAAAGGTTTTGCCAGCAATGTAGCAGGTTTCACGAGTTATCAGAATTTGATGAGTTAAAAAGAAGTTGTAGAAGACGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAATGCATCGGAATTTAATGGAGAAGGAATTCATTGA 417 0.3909 MDESWGEGKRSYEYEVEEEEDVSYGDDGKKKRVVGSEHHVKKVSKAGGSVTPCCQVDNCNADLSGGKQYHKRHKVCENHSKAHSVIISEMQQRFCQQCSRFHELSEFDELKRSCRRRLAGHNERRRKNASEFNGEGIH* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4661 138 Gene3D - 44 115 IPR036893 GO:0003677|GO:0005634
Psa1g4661 138 MobiDBLite consensus disorder prediction 119 138 - -
Psa1g4661 138 PIRSF SBP 2 138 IPR017238 GO:0003677|GO:0003700|GO:0009908
Psa1g4661 138 MobiDBLite consensus disorder prediction 1 30 - -
Psa1g4661 138 Pfam SBP domain 54 127 IPR004333 GO:0003677
Psa1g4661 138 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 6 129 - -
Psa1g4661 138 ProSiteProfiles Zinc finger SBP-type profile. 51 128 IPR004333 GO:0003677
Psa1g4661 138 MobiDBLite consensus disorder prediction 1 16 - -
Psa1g4661 138 SUPERFAMILY SBT domain 52 131 IPR036893 GO:0003677|GO:0005634
Psa1g4661 138 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 6 129 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4661 Psa-Chr1 354241845 354244004 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4661 30 136 SBP-box Gene Family AT1G53160 61.111 1.10e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa1g4661 SBP 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4661 - - gmx:100782285 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4661 1 354241845 354244004 Psa1g4661 1 354241845 354244004 ECH
Psa5g5558 5 484972433 484974021 Psa1g4661 1 354241845 354244004 ECH