Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4655 ATGCCTGTTTCTGATTCTCCATCTGTGTCAGATGATCCTTCTCTTCAAGAAGAGGAAGATGATGAAGAAGGTTCCGAGGAAGAACAAGAAGTAGAAGAGGAAGAAGATCAAGATCAGGAAGACGAAGAAGTTGAAGAAGAAGAGGAAGAGGTCGAAGAAGTTGAAGAGGAGGTGGAGGAAGAAGTTGAAGAAGAAGAGGAGGAGGAGGAAGTTGAAGAGGAAGAGGAGGAGGAAGTTGAAGAGGAAGAGGAGGAAGAAGAAACAGTAGAGGTGGAAGAGGAGGAGGAAGAAGTTGAAGAGGAAGTTGAGGAGGAGGAAGAAGAAGTTGAAGAAGAAACAGTAGTAGAGAAGAAAAATGAAGACAAAGATGAGATTCCAGTTTCTCTGCCTGATGAGAATGAGCTTAACAAAGAAACTGTGGAAGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGAAGAAGAAGAAGAAAAAGAAGAAGCAATAGAGATGGAAGAAGAGGAAAAACAAGAAACCGTAGTAGAGGAGAAAGATAAAGACAAAAATGGGGTTCCAGATTCTCTTCCTGACACGGATAAACATAGCAAAGATTCATGCCAAAACATGGAGCTTGATGTAAAAGAGGAGAATTTGGGTTCAGTTTCTTCTGTGCCTGAGAATCCTGAAGTAATACGGTCATCACATGATATGGAAGAGAGCAATGTCGTGCTTTTAGCATCTGGTCCGCCGCATGAGGAATTGACATTGAAACAAGAAGTTTCTAGTCCTCCAAAACCAAGTGAAAACTTGATTTCTGCTGAAGATGAGAAAAATCAAGGCTTAAATGTTGATGCTGAAAATTCTGGATATCTTCAGAAGAAAACCTTTGGAGGATGCAGTGAACCAGTTTGCAATAGCAAAGCTTCTTTATCTGATGTTAAGGACATTGATTCTAGGGCCACCAAGTCATCTAGTAATAATACGGTAAAAGACGTGGTTACTGGAATCATACCAAGAGATGATTTTGTCGAGAATTCTGATGGTGGTCAGAACTCTAAGGAGAAAATTAAGCAGTCAGAGACGGAGTCAAGGGTTGATGCGAAACAAAAGCCATCAAGGGCTAGAAGTCCGTCTCCCAGTGCTCAGATTACAGACGGAAACAAAAGACGTGCAGTTATATGTGCTTTTTTCGCTAAAGGTTGGTGCATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATAGTGCGAGTAATACCGACCAGGGAGCTGAAGGAAACCTAGTTAATGCACATCAGAAGAGGGAATTGAAATTGGAAAAAGTTAAGGAAAATGTTGGCGTGTCAAGAACGAATGAGGGAGAAGCAAGTCCAAGATGGCATCCATCTCATGAAAAAGAGAAGTTTCCGACGAGGGACAGCTTGTTTCCAAAGAAGACATCAAACAATTATTTCAGCTCAAATCTTTCCTCGTATTCATCCCGTGCAGAGGGAATGGCTTCTATTCGAAACCAACATGTGTACAGAGGATATACACCGACAAAAGATTTTAATTCGTCTTTAGGTGCAAGTGCTTTGGACTCTCAAAAGCTCTTGAACAGTGACAAGGAATATCACGCCTATAAGTCCACTTTCTCTTCAGACCGGGAAGATCTAGGTGGTTCATCTAGGGTTTCACCACATGCTAATGGATATAAACTGAAAACCCGTTCGTATGATTGGGAACCTTCTGTTCCATTTCGACCGTCCTTTTTTATTACTTCTATGAATGTATCATCCCCTGGAGATCTTTATGACCCTCTTCGCGATAGCATTGAGATACCTAATATTGGAGACGGGTCTTTGAAAGCTTCCCTTCTAATTCGAGGGTCATCTATCCAGGCTTCATCACAGTTGCGGACATATGATGATTCTGCTGCAGTTGGGAAACACATGTCCGATCTTAATGATGACAAAAGTTCGGTATCTTCCCATAATAAATTTTATGAAAATGAGCCAAACAGAAGTTCTGTTCCTCGTGGAAAAGATTCTCTTGCAACCAAAACAGAAATAACATCAGGTACTTGTGCGAACTACCAAAATGGTAACATAGATGTGGGACAAAATGCCTTTGGTGTTGAAGATAGGATTGAAACAACGAAAAAACGGACCAAGCATGATGCTAGGCATCACGGTGATGGATCAGAGCACAAAAATAAAAGAGTAGCAAGGGATGATAAAATTCATGAAATGGAGGTTGACTTTCAGACGGATGGCAGTATGCACAAAGAAACAAAGGCGCTGAAAATTTTTCGTGCAGCCCTTGTTGATCTAGCAAAAGAGTTGCTAAAACCATTTTGGCATGAGGGTCGTCTCAGCAAGGAAGCACATATAACAATAGTTAAAAAATCAGTTGACAAGGTTGTTAGCACTTTAGAGCCACACCAAATTCCAACAAATGAAGATTCTGCTCAGCAATATATTTCTTCATGTCGGCCGAAAATTACAAAGTTAGTCCATGGATATGTCAATAAACATGGCAAATCTTGA 2505 0.4092 MPVSDSPSVSDDPSLQEEEDDEEGSEEEQEVEEEEDQDQEDEEVEEEEEEVEEVEEEVEEEVEEEEEEEEVEEEEEEEVEEEEEEEETVEVEEEEEEVEEEVEEEEEEVEEETVVEKKNEDKDEIPVSLPDENELNKETVEEEEEEEEEEEEEEEEKEEAIEMEEEEKQETVVEEKDKDKNGVPDSLPDTDKHSKDSCQNMELDVKEENLGSVSSVPENPEVIRSSHDMEESNVVLLASGPPHEELTLKQEVSSPPKPSENLISAEDEKNQGLNVDAENSGYLQKKTFGGCSEPVCNSKASLSDVKDIDSRATKSSSNNTVKDVVTGIIPRDDFVENSDGGQNSKEKIKQSETESRVDAKQKPSRARSPSPSAQITDGNKRRAVICAFFAKGWCIRGSSCSFLHIKDSASNTDQGAEGNLVNAHQKRELKLEKVKENVGVSRTNEGEASPRWHPSHEKEKFPTRDSLFPKKTSNNYFSSNLSSYSSRAEGMASIRNQHVYRGYTPTKDFNSSLGASALDSQKLLNSDKEYHAYKSTFSSDREDLGGSSRVSPHANGYKLKTRSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIRGSSIQASSQLRTYDDSAAVGKHMSDLNDDKSSVSSHNKFYENEPNRSSVPRGKDSLATKTEITSGTCANYQNGNIDVGQNAFGVEDRIETTKKRTKHDARHHGDGSEHKNKRVARDDKIHEMEVDFQTDGSMHKETKALKIFRAALVDLAKELLKPFWHEGRLSKEAHITIVKKSVDKVVSTLEPHQIPTNEDSAQQYISSCRPKITKLVHGYVNKHGKS* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4655 834 MobiDBLite consensus disorder prediction 115 135 - -
Psa1g4655 834 ProSiteProfiles Zinc finger C3H1-type profile. 380 407 IPR000571 GO:0046872
Psa1g4655 834 MobiDBLite consensus disorder prediction 332 377 - -
Psa1g4655 834 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 145 834 - -
Psa1g4655 834 MobiDBLite consensus disorder prediction 12 114 - -
Psa1g4655 834 MobiDBLite consensus disorder prediction 638 668 - -
Psa1g4655 834 Gene3D - 372 446 - -
Psa1g4655 834 MobiDBLite consensus disorder prediction 449 465 - -
Psa1g4655 834 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 145 834 - -
Psa1g4655 834 MobiDBLite consensus disorder prediction 440 465 - -
Psa1g4655 834 Pfam Torus domain 351 404 IPR032297 -
Psa1g4655 834 MobiDBLite consensus disorder prediction 252 274 - -
Psa1g4655 834 MobiDBLite consensus disorder prediction 1 274 - -
Psa1g4655 834 MobiDBLite consensus disorder prediction 136 170 - -
Psa1g4655 834 MobiDBLite consensus disorder prediction 338 363 - -
Psa1g4655 834 MobiDBLite consensus disorder prediction 651 668 - -
Psa1g4655 834 SMART c3hfinal6 380 406 IPR000571 GO:0046872
Psa1g4655 834 Coils Coil 132 174 - -
Psa1g4655 834 SUPERFAMILY CCCH zinc finger 380 404 IPR036855 GO:0046872
Psa1g4655 834 MobiDBLite consensus disorder prediction 706 727 - -
Psa1g4655 834 MobiDBLite consensus disorder prediction 171 203 - -
Psa1g4655 834 Coils Coil 15 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4655 Psa-Chr1 354170761 354176713 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa1g4655 Torus 1.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4655 - - cam:101503101 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4655 1 354170761 354176713 Psa1g4655 1 354170761 354176713 ECH