Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4652 ATGGCTTCTTCATCTTCTTCTGCGAACCGTGAGGGACACTACAGAGGGGTTAGAAAGCGACCATGGGGACGCTACGCTGCTGAGATTCGTGATCCCTGGAAGAAGACACGTGTTTGGTTGGGTACATTTGATACTCCTGAGGAAGCCGCGCTTGCTTACGACGGTGCCGCTCGTTCTCTCCGTGGAGCTAAAGCTAAAACCAACTTCCCTCCGGCTCCGGTAGCCGGCGGTCTTTGCCTAGACCTCAACGCTCCTTCTACTGATCTCCGATGGCCGCCAGTTCCTTCTCGCAGCTTAGTTCTCACTGAGTTTCTCCAAACCGGTGTTCTCAAGGATTTCAACCCACCTCAGCCCCCACCCATCACTGCCGTCTCTGGACAGAGACGCAATGAAGGTGGTCTTCCTGTATCTGCCAGAGTTCAGATGGTTGAGAACTCCCCAACGGCAGCTTACTTGGGACTTGTTAGACGTGGGATCCCGATTGACCTGAACGAACCTCCACCGTTGTGGCTATGA 516 0.5426 MASSSSSANREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPVAGGLCLDLNAPSTDLRWPPVPSRSLVLTEFLQTGVLKDFNPPQPPPITAVSGQRRNEGGLPVSARVQMVENSPTAAYLGLVRRGIPIDLNEPPPLWL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4652 171 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
Psa1g4652 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 8 161 - -
Psa1g4652 171 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 161 - -
Psa1g4652 171 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Psa1g4652 171 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Psa1g4652 171 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Psa1g4652 171 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Psa1g4652 171 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Psa1g4652 171 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Psa1g4652 171 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4652 Psa-Chr1 353942321 353944381 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4652 4 171 AP2-EREBP Transcription Factor Family AT1G28360 48.515 8.40e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa1g4652 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4652 - - cam:101504196 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4652 1 353942321 353944381 Psa1g4652 1 353942321 353944381 ECH