Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa1g4652 | ATGGCTTCTTCATCTTCTTCTGCGAACCGTGAGGGACACTACAGAGGGGTTAGAAAGCGACCATGGGGACGCTACGCTGCTGAGATTCGTGATCCCTGGAAGAAGACACGTGTTTGGTTGGGTACATTTGATACTCCTGAGGAAGCCGCGCTTGCTTACGACGGTGCCGCTCGTTCTCTCCGTGGAGCTAAAGCTAAAACCAACTTCCCTCCGGCTCCGGTAGCCGGCGGTCTTTGCCTAGACCTCAACGCTCCTTCTACTGATCTCCGATGGCCGCCAGTTCCTTCTCGCAGCTTAGTTCTCACTGAGTTTCTCCAAACCGGTGTTCTCAAGGATTTCAACCCACCTCAGCCCCCACCCATCACTGCCGTCTCTGGACAGAGACGCAATGAAGGTGGTCTTCCTGTATCTGCCAGAGTTCAGATGGTTGAGAACTCCCCAACGGCAGCTTACTTGGGACTTGTTAGACGTGGGATCCCGATTGACCTGAACGAACCTCCACCGTTGTGGCTATGA | 516 | 0.5426 | MASSSSSANREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPVAGGLCLDLNAPSTDLRWPPVPSRSLVLTEFLQTGVLKDFNPPQPPPITAVSGQRRNEGGLPVSARVQMVENSPTAAYLGLVRRGIPIDLNEPPPLWL* | 172 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa1g4652 | 171 | CDD | AP2 | 13 | 72 | IPR001471 | GO:0003700|GO:0006355 | |
Psa1g4652 | 171 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE | 8 | 161 | - | - | |
Psa1g4652 | 171 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 8 | 161 | - | - | |
Psa1g4652 | 171 | SUPERFAMILY | DNA-binding domain | 13 | 70 | IPR016177 | GO:0003677 | |
Psa1g4652 | 171 | Gene3D | AP2/ERF domain | 13 | 71 | IPR036955 | GO:0003700|GO:0006355 | |
Psa1g4652 | 171 | PRINTS | Ethylene responsive element binding protein signature | 14 | 25 | IPR001471 | GO:0003700|GO:0006355 | |
Psa1g4652 | 171 | PRINTS | Ethylene responsive element binding protein signature | 36 | 52 | IPR001471 | GO:0003700|GO:0006355 | |
Psa1g4652 | 171 | SMART | rav1_2 | 13 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Psa1g4652 | 171 | ProSiteProfiles | AP2/ERF domain profile. | 13 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Psa1g4652 | 171 | Pfam | AP2 domain | 13 | 62 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa1g4652 | Psa-Chr1 | 353942321 | 353944381 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa1g4652 | 4 | 171 | AP2-EREBP Transcription Factor Family | AT1G28360 | 48.515 | 8.40e-46 | 147 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Psa1g4652 | AP2 | 2.6e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa1g4652 | - | - | cam:101504196 | 309.686 |