Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4643 ATGAAAGAACATTTAAGAGCTGAGAAAAGGAAGCAAAAAGAAGAGATTCGCAGAGAGAAAGAGGCGGAGAGAAGGAAAGCAGCCCTTGAAAAGGCAAATGCTCGCAGAATAGCCAAAGAATCTATGGAGCTCATTGAGGATGAACAGCTGGAATTGATGGAGTTGGCTGCAGTAAGCAAGGGCCTTACCTCTATTATCCATATTGATCTTGATACTTTGCAAAACCTTGAATCATTTAGGGATTCCTTGTGTGTTTTCCCGCCCAGAAGTGTAAAGCTAAAAAAACCATTTGCTATCCAGCCCTGGATCAACTCGGATGAAGATGTTGGCAACCTTCTCATGGTTTGGAGATTCTTGATTACCTTTGCTGATGTTCTTGAGTTATGGCCTTTTACTCTTGATGAATTTGTGCAAGCGTTTCATGATTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTGTTCTTAAAGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTACAGGATTAGGACTGAACCAGAATGGAGCTGCTAATCCTGCCGGTGGCCATCCAGAGATTGTGGAAGGAGCATATACATGGGGCTTTGACATACGAAATTGGCAGAAGAACTTAAATCAATTAACATGGCCTGAAATTCTGCGACAGTTAGCATTATCTGCAGGATTGGGACCACAGTTGAGAAAAAGAAGTGTTACTTGGTCATATGCAAATGATAAAGACGAGGGAAGAAGTGGCGAAGATGTCATTTCAACACTTCGTAATGGTTCAGCAGCTGTAAGTGCAGTGGCAAAAATGCAAGAGAAAGGTCTATTAGCTCCTCGAAGATCGAGACACAGGTTAACTCCAGGAACTGTTAAATTCGCAGCATTTCATGTTCTCTCTCTTGAGGGCGGCAAGGGTTTGAATGTACTAGAGCTTGCAGAAAAGATTCAAAAATCTGGTCTTCGTGACCTGACAACCAGTAAAACACCTGAAGCATCAATTTCGGTTGCTTTGACTAGAGATGGCAAACTTTTTGAAAGGATAGCTCCATCAACATATCGTGTACGAACTGCATTTAGAAAGGATCCTACTGAGTCTGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATACAGATATTTGAAAATGGGTTTCTAGCTGGTGTAGATGCCGATGATGTTGAAAGAGAAGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGAGGATGATTTGATTAATCCTTCAAGTGGAAACCCAAATACAGAACAATATGATGACATGAACATTTGCTCGGTAAATGTAAAAGCAAATTTGGGTCATGCTGTAGACTTTATTCAAAATGAGCTTGATACAGATCTTCCTTGTTTTCCTGAGAATGGTTCCAAGGATGCTGATTGTTCCAGTTCTGTCACCAGACAACCAGTTGCTTGTGAAAATGTAAATACTGGAAATCTTGATGATGATGTCATGGAGATCGATGAAAGCAAGTCTGGAGAATCATGGGTTCAAGGGCTGACAGAAGGAGAATATTCTGATCTCAGTGTAGAAGAGCGTCTAAATGCTCTTGTTGCATTGGTTGGTGTAGCAAATGAAGGAAATTCAATCCGTATTGTTCTTGAGGATCGATTGGAATCAGCAAATGCTCTGAAAAAGCAAATGTGGGCAGAAGCACAAATAGATAAAGTTCGGCTAAAAGATGATTATATTGTTAAATTAGATTACACGTCACTTACTGGAAATAAATTTGAAACACAAGACACATATCCTGCTGTTGAGGAAAACCGTAGCCCGTTGCTCAACATCAATATTAACAACATTAAGAATGAAGCATCCCCCAGCACTACAGAAAACCAAAAAGGAACTCCTTCTGTACAGAGCCTACTTATTGAAAAGCCATCAACAGTTCAAGATTTCTGCACAGGAATAGGTCCAGACAACTTTCAGACTCAGGTAGCTGCACCGTATTCAAAAAGGTCACGGTCACAGTTGAAGTCCTATATTTCCCACATAGCAGAGGAGATGTATGTCTACAGATCTTTACCCCTTGGCCAAGACCGCAGGCGTAATCGATATTGGCAGTTTGTTGCGTCTGCTTCTAGTAATGACCCTGGTTCTGGCAGGATCTTTGTTGAACATCATGAAGGCAGTTGGAGGCTTATTGATTCCGAAGAGGCCTTTGATATTCTTTTGACATCACTGGATTCACGCGGGATCAGGGAATCTCATCTGCGCTTAATGTTGCAAAAGATTGAGAAATCCTTTAAAGAAAATGTTCGAAAAACTACACAATATGCAAAAATTGGAAGCGTAGAGAAATATTCTATAAAAACTGAAGCTGATGAAACATATCTGGTGCCTGAGCGCCATTCAGGACCTGACAGTTCTAGCAGTACCCTTCATGACTTGAACTCTAGTACATCAGAAACTTCATCATCCTTCAAAATCGAGCTTGGGAAAAGTGAGAATGAAAAGAAAGCTGCCTCGAGAAGGTATCAAGATTTTCAAAAGTGGATGTGGAAAGAATGCTATAGTTCATCGATTTTATGTGCAATGAAATTTGGGGTAAAAAGATGCAAACCTCAGGTGGTTATTTGTGAAATCTGTCTCAATCCTTATTTTGTTGAAGACCCCCATTGCAATTCCTGCCACCGCACATTTCCGTCAAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTGTTGGCAATTTATCCAAAGATATTTGTATTTTGGAACATTCTCTTCCCATGAGGACAAGATTGCTTAAGATCCTACTGTCATACATGGAGGCATCTGTTCTCTCTGAAGCATTTGGAACAATTTGGACAGCTGATTTTAGGAAGCATTGGGGTGTGAAGTTGAGTAAATCATCGTCTGTTGAGGAACTTTTACAGATGTTGACCCTATTTGAAAAAGCACTAAAGCGTGATTTTCTATCACCAAACTTCTCGACAACAGAAGAATTATTGGGATTAAGCAGAATGTCAGAAAAGGCTGCACATGTGTCTGCTGATCCTGAATCAGTTGCTCTACTTCCATGGGTTCCACAAACTACTGCAGCATTGTCTCTCAGGCTATTTGAGTTTGATTCATCCATTAGCTATGTAAAGCTCGAGAGACTTGACCCCGGTGAGGAGAAAGAAGCAAGAGAATACATTAGGCTTCCATCAAGATATACTTCCTTCAAGCCTAATAGAGAGATTGAGCCAGCAGCTCTTGATCATGATGCATTCACCAAAATTAAATCTTCTACTAATAAAATTGTTCATAGTGGAAATAAACGTGGACGAGGGGCTAGTGATCATGGGAGGGTGAAAAAGCTGTCTAAAAGAATGTACAATTCCAAACGAGACACTGGCCGTCGAAACATTAATGTCACCGAGAATCTAAGTCAGAGATTAAGACTGCAGGGACGAGGACCACAAGGGCAAGGGGGTGGACGAGGTCGTCGAACAGTCAGGAAACGTAGAGTAGAAAAGAGAGCTGTTGAAGATTTGTTGCTGGGCCATGCAGCAGCTGGTCATAGCTTCAAGAGTGCTAAAGAACCACTGAGAAGTTTGGATGAAGAATGGGATGTAGAAAAAGCAAGTTCCATGACTCCTGTTCACATTGGGGTTGCTGAAAATAGTATCAGTGCTGAAGAGGTGGAGTCTGATGATAATGCTTTAGGAGTGGAGTCTTATGATAATGCTCAAGGAATGGAATCTGATGATAATGCTCAAGAAATGGAATATGATGATAATGCTCAAGAAATGGAATATGATGATAATGCTCAAGCAGTGGAATCTGATGATAATGCTCAAGCAGTAGAATATGATCATGGAAACTGGGAGATAGGTTATAATGGCGTCTCCCCTAACAGATGGCACAGGGATTTGGTTGGAATGAGTGATGAAGACGGGGATGCTTTTGAAGATGATAATGAGAATGTCAATGTTAATGGCTTTGAAGAGAATTTCGAGGAAGATTCTGAGGAAGATATTATGAGTGAAGGTTCGGATCACATGGCCAATAGAGTAATAAACGTAGGAGGCTCAGATTTGTCTGTCTCTGAAGATTCTTCTGATTAG 4071 0.4056 MKEHLRAEKRKQKEEIRREKEAERRKAALEKANARRIAKESMELIEDEQLELMELAAVSKGLTSIIHIDLDTLQNLESFRDSLCVFPPRSVKLKKPFAIQPWINSDEDVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVAVLKVIIKDIEDVARTPTGLGLNQNGAANPAGGHPEIVEGAYTWGFDIRNWQKNLNQLTWPEILRQLALSAGLGPQLRKRSVTWSYANDKDEGRSGEDVISTLRNGSAAVSAVAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGGKGLNVLELAEKIQKSGLRDLTTSKTPEASISVALTRDGKLFERIAPSTYRVRTAFRKDPTESESILSEARKKIQIFENGFLAGVDADDVEREESESDEVDEDPEEDDLINPSSGNPNTEQYDDMNICSVNVKANLGHAVDFIQNELDTDLPCFPENGSKDADCSSSVTRQPVACENVNTGNLDDDVMEIDESKSGESWVQGLTEGEYSDLSVEERLNALVALVGVANEGNSIRIVLEDRLESANALKKQMWAEAQIDKVRLKDDYIVKLDYTSLTGNKFETQDTYPAVEENRSPLLNININNIKNEASPSTTENQKGTPSVQSLLIEKPSTVQDFCTGIGPDNFQTQVAAPYSKRSRSQLKSYISHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEHHEGSWRLIDSEEAFDILLTSLDSRGIRESHLRLMLQKIEKSFKENVRKTTQYAKIGSVEKYSIKTEADETYLVPERHSGPDSSSSTLHDLNSSTSETSSSFKIELGKSENEKKAASRRYQDFQKWMWKECYSSSILCAMKFGVKRCKPQVVICEICLNPYFVEDPHCNSCHRTFPSNNGFNFSKHAFQCVGNLSKDICILEHSLPMRTRLLKILLSYMEASVLSEAFGTIWTADFRKHWGVKLSKSSSVEELLQMLTLFEKALKRDFLSPNFSTTEELLGLSRMSEKAAHVSADPESVALLPWVPQTTAALSLRLFEFDSSISYVKLERLDPGEEKEAREYIRLPSRYTSFKPNREIEPAALDHDAFTKIKSSTNKIVHSGNKRGRGASDHGRVKKLSKRMYNSKRDTGRRNINVTENLSQRLRLQGRGPQGQGGGRGRRTVRKRRVEKRAVEDLLLGHAAAGHSFKSAKEPLRSLDEEWDVEKASSMTPVHIGVAENSISAEEVESDDNALGVESYDNAQGMESDDNAQEMEYDDNAQEMEYDDNAQAVESDDNAQAVEYDHGNWEIGYNGVSPNRWHRDLVGMSDEDGDAFEDDNENVNVNGFEENFEEDSEEDIMSEGSDHMANRVINVGGSDLSVSEDSSD* 1357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4643 1356 Pfam DDT domain 107 162 IPR018501 -
Psa1g4643 1356 MobiDBLite consensus disorder prediction 783 806 - -
Psa1g4643 1356 MobiDBLite consensus disorder prediction 1091 1118 - -
Psa1g4643 1356 MobiDBLite consensus disorder prediction 1094 1118 - -
Psa1g4643 1356 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 677 749 IPR028941 -
Psa1g4643 1356 ProSiteProfiles HARE-type HTH domain profile. 287 356 IPR007759 GO:0006355
Psa1g4643 1356 ProSiteProfiles DDT domain profile. 106 165 IPR018501 -
Psa1g4643 1356 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1255 IPR044977 GO:0006357
Psa1g4643 1356 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1235 1356 IPR044977 GO:0006357
Psa1g4643 1356 Pfam HB1, ASXL, restriction endonuclease HTH domain 287 355 IPR007759 GO:0006355
Psa1g4643 1356 PANTHER HOMEOBOX DOMAIN PROTEIN 1 1255 - -
Psa1g4643 1356 PANTHER HOMEOBOX DOMAIN PROTEIN 1235 1356 - -
Psa1g4643 1356 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 496 539 IPR028942 -
Psa1g4643 1356 SMART testlast3 106 165 IPR018501 -
Psa1g4643 1356 MobiDBLite consensus disorder prediction 1 21 - -
Psa1g4643 1356 Coils Coil 2 37 - -
Psa1g4643 1356 MobiDBLite consensus disorder prediction 388 422 - -
Psa1g4643 1356 MobiDBLite consensus disorder prediction 1132 1156 - -
Psa1g4643 1356 MobiDBLite consensus disorder prediction 788 806 - -
Psa1g4643 1356 MobiDBLite consensus disorder prediction 390 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4643 Psa-Chr1 353561549 353567905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4643 2 1241 Homeobox Transcription Factor Family AT1G28420 49.883 0.0 1075
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Psa1g4643 WSD 4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4643 - - ccaj:109811517 1927.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4643 1 353561549 353567905 Psa1g4643 1 353561549 353567905 ECH