Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4642 ATGGAGGAAGAAGCAGAGAATAATACTCAGAAGGTTGATGATGGAGTTGAAAATAGCAATGAGAATTTCAACAACAATGAAAGCAATAGTAAAATTATGAGTTCCAGTGAAGGTCAAAGCAAGCCCAAGCGTCAGATGAAAACGCCTTTTCAACTTGAAGCGCTGGAGAAAGCTTATGCTTTGGAAACTTACCCGTCGGAGGCTACTAGGGTGGAGTTGTCGGAGAAGTTGGGGTTGTCGGATCGGCAGTTACAGATGTGGTTCTGTCACCGGAGGTTGAAAGATAAGAAGGAGTTACCGTCTAAGAAGCTACGTAAGGTGCCACCTTTGGTGAATTCTACTACTGATGAACTTAACCCCAAGTTGGCTCTTGAGCCTTGTAATGAATATGGATCCGGGTCGGGTTCTGGGTGTAGTCCGGTGACCCGACCGGAGTTGCGAAATGTGGTGCCTCTGCGTTACTATGAGTCGCCCCAGACTATAATGGAGCTTAGAGCTATTGCTTGTGTGGAAGCACAGTTAGGGGAGTCTTTGAGGGAAGATGGACCTATTTTGGGAATTGAGTTTGATCCGTTGCCACCGGATGCATTTGGGGCACCCTTAGCTGTTGCGGAGCAGCAGAAGCGGCCTGGTCTTGCCTACGATGATAAAATATATGAAAGACATGAAGTTAGACCGAATAAGGCAATGACAAGGACGTTCCCTGAATATACATTTGTTCCGAACCAGTCCAGCATTAGGTCTGACACGTTTGAACAATTGAGTCAACCTCATTTATATGATCCAATGGAGGGTCCTACCAGAACTCCTCCTTTTCCGATTGGAAATGAACATCTACCTAGAATTCATGCTACTCAAAGCCATTCTTCCCGTGCTCGCCTTTCGTCTCAACATGATAAGCAAGTGATTCCCTATACTTCCCCTCCTCCCCTTTTGTCTCAACAGAACAAGCAATTGATTCCCTTTCCATCTCCTCCTCGAGATGATGATGTTGTCCCCAATAGGGAACCTCACTCAAACATAGCCAATGCAGGCATGAACTCCCAATTCACAGATCACCAAATTGTTGGACAAGAAAATCCTTTAGCTTTAGCTTTACCTGGTGGACAAGTTTTCCCCAATGATGCGGTATTGCGGGTGGAGAAGAAACGAAAGAGTGATGATGCCAGAGTTGCCAAGGAAGTTGAAGCCTATGAAATAAGGATGAAGAAAGAACTTGAGAAACAAGATATCCTAAGAAAAAAGGTTTTATTCAATGAACATAAGCTGCCATCATGCATTATATGA 1287 0.446 MEEEAENNTQKVDDGVENSNENFNNNESNSKIMSSSEGQSKPKRQMKTPFQLEALEKAYALETYPSEATRVELSEKLGLSDRQLQMWFCHRRLKDKKELPSKKLRKVPPLVNSTTDELNPKLALEPCNEYGSGSGSGCSPVTRPELRNVVPLRYYESPQTIMELRAIACVEAQLGESLREDGPILGIEFDPLPPDAFGAPLAVAEQQKRPGLAYDDKIYERHEVRPNKAMTRTFPEYTFVPNQSSIRSDTFEQLSQPHLYDPMEGPTRTPPFPIGNEHLPRIHATQSHSSRARLSSQHDKQVIPYTSPPPLLSQQNKQLIPFPSPPRDDDVVPNREPHSNIANAGMNSQFTDHQIVGQENPLALALPGGQVFPNDAVLRVEKKRKSDDARVAKEVEAYEIRMKKELEKQDILRKKVLFNEHKLPSCII* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4642 428 SUPERFAMILY Homeodomain-like 28 97 IPR009057 -
Psa1g4642 428 Coils Coil 395 415 - -
Psa1g4642 428 Pfam Homeodomain 41 97 IPR001356 GO:0003677
Psa1g4642 428 PANTHER HOMEOBOX DOMAIN PROTEIN 6 415 - -
Psa1g4642 428 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Psa1g4642 428 CDD homeodomain 43 98 IPR001356 GO:0003677
Psa1g4642 428 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 6 415 IPR044977 GO:0006357
Psa1g4642 428 MobiDBLite consensus disorder prediction 12 46 - -
Psa1g4642 428 MobiDBLite consensus disorder prediction 1 49 - -
Psa1g4642 428 Gene3D - 24 99 - -
Psa1g4642 428 SMART HOX_1 40 102 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4642 Psa-Chr1 353558675 353561352 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4642 34 423 Homeobox Transcription Factor Family AT1G28420 40.288 1.29e-65 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Psa1g4642 Homeodomain 4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4642 - - gmx:100777465 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4642 1 353558675 353561352 Psa1g4642 1 353558675 353561352 ECH
Psa7g2671 7 190496962 190505764 Psa1g4642 1 353558675 353561352 PCT