Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4633 ATGTCTCTACTGTTTCTGTTTCTGTTTCTCTTCTTCATCTTTCTTCAACCAGTTTTCTCTCTCAACCAAGAAGGTCTCTACCTGTACCAATTCAAGCTCTCCGTAGACGATCCTGACTCTTCTCTCTCCTCATGGAACAACCGCGACCAAACACCTTGTAACTGGTCCGGCATAACCTGCCACGACGGAACAAACACCACCACCACCGTAACTCAAATCAACCTCTCCAACTTCAACATCGCCGGTCCACTACCAACCTCAATACTCTGTCGTTTAACAAACCTCACCACTCTCATCCTCACCAACAACTCCATCAACGAAACACTACCTTCGGGAATTTCTCTTTGCACCTCCCTTACTCATTTGGACCTCTCTCAAAATCTCCTCACTGGCACACTCCCCGAGACTTTACCTCTCCTCTCTAACCTCCGTCATCTCGACTTAACGGCTAACAACTTCTCCGGTTCAATCCCCATCTCATTCGGAAAGTTTCAGAAACTTGAAGTAGTTTCACTCGTTTACAATCTTCTAGAATCTTACATTCCTGCTTCGTTAGGAAACATCACCACTCTCAGAACGCTGAATCTTTCTTATAACCCTTTTCAACCTTCTCAGATTCCGCCGGAGATCGGAAACCTAACGAACCTCGAGATTCTCTGGCTTAGTTCGTGTAATCTTGTCGGTGTTATTCCTGAGTCGTTCGGGAATTTGAAGAAACTCAGTGTGCTTGATCTTTCCATGAATAATCTTGAAGGTTCTATTCCGAGTTCGCTTGCTTTGATGACGAGTTTGAAGCAGATTGAGCTTTATAATAACTCATTGTCCGGTGAGTTACCTTCCGGAATGTCGAACCTTACTTCGTTGAGGCTTATCGATGTTGCTATGAATCGTATTGGTGGTGTTATTCCTGATGAGTTATGCCGTTTACCGCTTGAGAGTCTTAATCTCTATGAGAATCGGTTTACCGGTGAGTTGCCGGCGAGTATAGCTGACTCGCCGAACCTATACGAGTTCAAGATTTTTACGAACTTGCTCTCCGGTGAGTTGCCGGAGAATCTCGGGAAGAATGGTCCGTTGATATGGTTCGATGTTTCCAATAATTCATTCTCCGGCAAGATTCCGGCGAGTTTGTGCGAGCGCGGCGCGTTGGAGGAGTTACTGATGATACATAATTCGTTCTCTGGTGATATTCCGGTGAGTTTGGGTGCGTGTAGAACTTTGACTCGTTTTAGGTTGGGTTTTAATAATTTGTCCGGCGAAGTTCCGGTGGGTTTGTGGGGCTTACCGCATGTGTATCTTCTTGAACTGGTTGACAACTCGTTTTCTGGTTCAATTGCTAACACCATTGGTGGAGCTGGAAATCTGTCTCTGTTGACTATATCGAATAATAAATTCTCCGGTGCGATTCCTGAAGAGATTGGAAGGTTGGTAAATCTTCAGGAGTTTTCTGCTGGTAATAACCAGTTCAACTATTCGTTGCCTGAGAGTATTGTGAATCTCTCCCAGCTTGGGATTCTTGATCTTCACAACAATAAGATCTCTGGTGAGCTTCCAAAAGGAATTCCATCTCTTAAGAAACTCAACGAGTTGAATTTGGCTAGTAACGAGATTGGTGGGAAAATTCCTGAAAAAATTGGGAGTATGTCTGTGCTTAACTTTCTTGATCTTTCTAGTAATAGATTTTCGGGTAATGTTCCGATGAGTTTGCAGAATTTGAAGCTCAATCAGCTGAATTTGTCTTACAATTTGCTTTCTGGAGAGATTCCACCTCTTATGGCTAAGGATATGTATAGGGATAGTTTTATCGGTAATCCTGGTTTGTGCGGAGATTTGAAAGGTTTGTGTGATGTCGGAGGAGAGGGTAAGAGTGCTAATTTTGTTTGGTTGCTTAGAGCTATTTTCATAATTGCAGCGTTGGTTTTTGTCTTTGGTGTGATTTGGTTCTACTTCAAGTACAAGAATATTAAGAAGGCTAGATCTATTGATAAAACCAAATGGACATTGATGTCATTTCATAAACTGGGTTTTGGTGAAGATGAGGTTTTGAATTGTCTTGATGAAGATAATGTCATTGGAAGCGGATCGTCCGGGAAAGTCTATAAAGTTGTGCTTCGCAACGGGGAAGCTGTTGCGGTGAAGAAGATATGGGGAGGGGTTCAAATGGAAACGGAGAGTGGAGATACTAAAAAGAAGCAATTTCAAGATAATGCTTTTGATGCAGAGGTTGAAACTTTGGGCAAGATTAGGCACAAGAACATTGTAAAACTATGGTGTTGTTGTACCACTAGGGATTGCAAGCTATTGGTTTACGAGTATATGCCGAATGGTAGTCTTGGTGATTTGCTGCATAGCAATAAAGGAGGATTGTTGGATTGGCCGACTAGGTATAAGATAGCTCTTGATTCTGCCGAAGGCCTCTCTTATCTGCATCATGATTGTGTTCCTCCTATAGTTCATAGAGATGTGAAATCTAATAACATCTTGTTGGATGAAGACTTTAGTGCAAAGGTTGCAGATTTTGGGTTAGCTAAGGCGGTTGAATCCAATGGGAGAGGAACTAAATCCATGTCCGTCATAGCTGGTTCTTGTGGCTATATTGCACCAGAATATGCATACACACTTAGAGTGAATGAGAAGAGCGACACATATAGTTTTGGCGTTGTTATCCTCGAGTTAGTCACCGGAAGGAAGCCGGTAGATCCCGAATTCGGAGAAAAAGACTTGGTTATGTGGGCATGCAACACCTTAGATCAGAAAGGTATCGACCACGTGCTTGACTCAAGGCTTGATTCTTTCTTCAAAGAAGAAATTTGCAAGGTCCTCAACATTGGCCTAATGTGCACTAGTCCTCTTCCAATCAACCGGCCGGCAATGAGAAGAGTGGTGAAAATGCTACAAGAGGTAGGCCCTGAAAGCCAATCAAAGTCTTCCCAAAAAGCAGGAAAGTTGTCCCCTTATTACTACGATGATGGGTCAGATCACGGAAGTGTCGCTTAA 2997 0.4301 MSLLFLFLFLFFIFLQPVFSLNQEGLYLYQFKLSVDDPDSSLSSWNNRDQTPCNWSGITCHDGTNTTTTVTQINLSNFNIAGPLPTSILCRLTNLTTLILTNNSINETLPSGISLCTSLTHLDLSQNLLTGTLPETLPLLSNLRHLDLTANNFSGSIPISFGKFQKLEVVSLVYNLLESYIPASLGNITTLRTLNLSYNPFQPSQIPPEIGNLTNLEILWLSSCNLVGVIPESFGNLKKLSVLDLSMNNLEGSIPSSLALMTSLKQIELYNNSLSGELPSGMSNLTSLRLIDVAMNRIGGVIPDELCRLPLESLNLYENRFTGELPASIADSPNLYEFKIFTNLLSGELPENLGKNGPLIWFDVSNNSFSGKIPASLCERGALEELLMIHNSFSGDIPVSLGACRTLTRFRLGFNNLSGEVPVGLWGLPHVYLLELVDNSFSGSIANTIGGAGNLSLLTISNNKFSGAIPEEIGRLVNLQEFSAGNNQFNYSLPESIVNLSQLGILDLHNNKISGELPKGIPSLKKLNELNLASNEIGGKIPEKIGSMSVLNFLDLSSNRFSGNVPMSLQNLKLNQLNLSYNLLSGEIPPLMAKDMYRDSFIGNPGLCGDLKGLCDVGGEGKSANFVWLLRAIFIIAALVFVFGVIWFYFKYKNIKKARSIDKTKWTLMSFHKLGFGEDEVLNCLDEDNVIGSGSSGKVYKVVLRNGEAVAVKKIWGGVQMETESGDTKKKQFQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSNKGGLLDWPTRYKIALDSAEGLSYLHHDCVPPIVHRDVKSNNILLDEDFSAKVADFGLAKAVESNGRGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDTYSFGVVILELVTGRKPVDPEFGEKDLVMWACNTLDQKGIDHVLDSRLDSFFKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLQEVGPESQSKSSQKAGKLSPYYYDDGSDHGSVA* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4633 998 SMART serkin_6 685 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4633 998 Gene3D Ribonuclease Inhibitor 382 617 IPR032675 -
Psa1g4633 998 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Psa1g4633 998 SMART LRR_typ_2 237 260 IPR003591 -
Psa1g4633 998 SMART LRR_typ_2 188 212 IPR003591 -
Psa1g4633 998 SMART LRR_typ_2 500 524 IPR003591 -
Psa1g4633 998 SMART LRR_typ_2 285 309 IPR003591 -
Psa1g4633 998 SMART LRR_typ_2 140 163 IPR003591 -
Psa1g4633 998 SMART LRR_typ_2 92 116 IPR003591 -
Psa1g4633 998 SMART LRR_typ_2 213 236 IPR003591 -
Psa1g4633 998 SMART LRR_typ_2 261 284 IPR003591 -
Psa1g4633 998 SUPERFAMILY Protein kinase-like (PK-like) 681 965 IPR011009 -
Psa1g4633 998 ProSiteProfiles Protein kinase domain profile. 685 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4633 998 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
Psa1g4633 998 Gene3D Transferase(Phosphotransferase) domain 1 773 990 - -
Psa1g4633 998 SMART LRR_sd22_2 116 145 - -
Psa1g4633 998 SMART LRR_sd22_2 213 239 - -
Psa1g4633 998 SMART LRR_sd22_2 92 115 - -
Psa1g4633 998 SMART LRR_sd22_2 476 502 - -
Psa1g4633 998 SMART LRR_sd22_2 261 287 - -
Psa1g4633 998 SMART LRR_sd22_2 524 550 - -
Psa1g4633 998 Gene3D Ribonuclease Inhibitor 203 377 IPR032675 -
Psa1g4633 998 SUPERFAMILY RNI-like 73 394 - -
Psa1g4633 998 MobiDBLite consensus disorder prediction 968 998 - -
Psa1g4633 998 Gene3D Ribonuclease Inhibitor 20 202 IPR032675 -
Psa1g4633 998 Pfam Protein kinase domain 687 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4633 998 Pfam Leucine rich repeat 215 274 IPR001611 GO:0005515
Psa1g4633 998 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Psa1g4633 998 PRINTS Leucine-rich repeat signature 119 132 - -
Psa1g4633 998 PRINTS Leucine-rich repeat signature 237 250 - -
Psa1g4633 998 ProSiteProfiles Leucine-rich repeat profile. 239 261 IPR001611 GO:0005515
Psa1g4633 998 PANTHER LRR RECEPTOR-LIKE KINASE 6 978 - -
Psa1g4633 998 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 978 - -
Psa1g4633 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Psa1g4633 998 Gene3D Phosphorylase Kinase; domain 1 670 772 - -
Psa1g4633 998 SUPERFAMILY RNI-like 311 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4633 Psa-Chr1 353268904 353273430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4633 18 998 Receptor kinase-like Gene Family AT1G28440 67.510 0.0 1364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa1g4633 Pkinase 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4633 - - gmx:100776936 1495.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4633 1 353268904 353273430 Psa1g4633 1 353268904 353273430 ECH
Psa1g4633 1 353268904 353273430 Psa7g2680 7 191193307 191197607 ECH