Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4632 ATGGAGAAATTTGAAATGCTAGTAGCTCCTTTGAGAAGGGAGGAGAGAATCATGTTGGATTCAATTTTTTTGAATGGATTGAAAGAAGAGATTCAAGCTGAGCTTAAACTCCATGAGAGTCAAAGCCTATCAGACCTAATGGACATGGCTTTACTCATTGAGGAGAAAAATGATGTGCTGCATAAGAAGGGTGGCTCTTGGAGAGATAGAGGAGGACCCTTAAAACTTAAAGATCCTGCAGACTTTGGAGGATTTAAGAAGGAAGGGGAAAGAGTCAGTAGTGGGGGAAATGAGAAATACAAGGGTAGGAGATTGAATCCTGCAGAGCTGGAAGAGAGGAGCAAAAAAGGGTTGTGTTTTAAGTGTGGAGACAAGTGGAATAGGGAGCATATCTGTAAGTTCAAGCATATGAGCTTGAAATTGTGTGAGAATAGCAGTGATGAAGAAGAAGAAACAGGGGGAATAGGGGTTCAAACAGAAGAACTGGTGGAAGCAGAAGAAGAATTCAAAACTCTACAATTGTCGATGCAAAGTAAACAAGGATTTACTTCTAACAAATCTTTTAAAGTGTGGGTGACGGTGCAGGAGAAGAAGCTGGTAACCCTAATTGATTCAGGAGCAACAAGTAATTTTATTGATGCCAAACTAGTAGAACAGATGGGATTGAAGTTGGTAGAAACTCCCCCTTATGTAATTGAGGTGGGAAATGGTGAAAGAGTCAAATATCAGGGAATCTGTGAAGGGTTGAGATTTATGGTGCAGGGGGTGGAATTTAACCAACATTTCTTTTTAATGGAGTTAGGAGGGACTGATATGGTGTTGGGGATGGATTGGTTGGCCAGTTTAGGTAATATTGAAGCAAACTTTGGGGAGTTAAGCCTGAAATGGGCATCTGAAGGACAGAAGCATAGTATACATGGTGATCCAATTTTGTGCACCAAACAAGCTTCCATGAAAGCTATGATAAAAGCTTTGCATAATGAAGGCATGGGATTTTTCCTACAGACTCTGCAGGCAGAGGAGCAGTCCCCAGAATTGACAGAATGGGAAGAAGTGTTGAAATCTTTTGAGAAGGTTTTCAATCTCCCTACTGGGTTACCTCCTATAAGGAAGCATGATCATGCGATTAGGCTCAAGGATGAAGCTGATATACCTAATCTCAGACCTTATAGTGAGGCTCAAGAAACTTTTGAGAAGTTGAAAATGGCTATGACTACTGTCCCTGTTTTGGCCATGCCTGATTTTGATGAAGAATTTGTTGTAGAAACCGATGCCTCAGGCCAAGGGATTGGAGCTGTCCTCATGCAAGGAGGAAAACCTATTTGTTACATGAGCCAAACACTATCTGACAGGGCTCAACAGAAATCTGTATATGAGAGAGAGCTGATGGCTATAGTCATTGCAATTCAAAAGTGGAGGCCTTATTTACTTGGACGGCATTTCAAAATTCACACAGATCAAAAAAGCCTTAAGTTTATCACTGAGCAGAGAATCATGGGAGGAGAACAGCAGAGGTGGTTATCCAAACTTTTAGGGTTTGATTTTGAAGTGAAGTACAAACCAGGAAAGGAAAACAGTGCTGCTGATTCACTGTCTAGACAGATGCAATATGCTCACATCACCACCATTCAGTGTGAAGCATGTGAAGGGTTAGAAGAGGAGATTAGGAAGGATGATAAATTGAGAAGTATTGTGCAGACCTTAATTTCAGACCCTGCCAGCCAGAAGGGGTTTCAGTTAAAAGGAGGGAGATTGTATCATGAAGGAAGGGTGGTGCAGCGAGTCCGAGTCACCGGTGGCGAGGTAGGTGCAGCGAGTTCACTCACTCCCAAAATCGGTCCACTCGGTCTCTCCCAAAGAAGATCGGAGAAGCCATTGCAAAGAAAACCGCTAAGGACTGGAAGGGTTTAA 1911 0.4233 MEKFEMLVAPLRREERIMLDSIFLNGLKEEIQAELKLHESQSLSDLMDMALLIEEKNDVLHKKGGSWRDRGGPLKLKDPADFGGFKKEGERVSSGGNEKYKGRRLNPAELEERSKKGLCFKCGDKWNREHICKFKHMSLKLCENSSDEEEETGGIGVQTEELVEAEEEFKTLQLSMQSKQGFTSNKSFKVWVTVQEKKLVTLIDSGATSNFIDAKLVEQMGLKLVETPPYVIEVGNGERVKYQGICEGLRFMVQGVEFNQHFFLMELGGTDMVLGMDWLASLGNIEANFGELSLKWASEGQKHSIHGDPILCTKQASMKAMIKALHNEGMGFFLQTLQAEEQSPELTEWEEVLKSFEKVFNLPTGLPPIRKHDHAIRLKDEADIPNLRPYSEAQETFEKLKMAMTTVPVLAMPDFDEEFVVETDASGQGIGAVLMQGGKPICYMSQTLSDRAQQKSVYERELMAIVIAIQKWRPYLLGRHFKIHTDQKSLKFITEQRIMGGEQQRWLSKLLGFDFEVKYKPGKENSAADSLSRQMQYAHITTIQCEACEGLEEEIRKDDKLRSIVQTLISDPASQKGFQLKGGRLYHEGRVVQRVRVTGGEVGAASSLTPKIGPLGLSQRRSEKPLQRKPLRTGRV* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4632 636 MobiDBLite consensus disorder prediction 612 636 - -
Psa1g4632 636 PANTHER - 21 391 - -
Psa1g4632 636 Pfam RNase H-like domain found in reverse transcriptase 392 483 IPR041577 -
Psa1g4632 636 SUPERFAMILY Acid proteases 184 283 IPR021109 -
Psa1g4632 636 Pfam Retroviral aspartyl protease 192 281 - -
Psa1g4632 636 SUPERFAMILY DNA/RNA polymerases 391 520 IPR043502 -
Psa1g4632 636 CDD RNase_HI_RT_Ty3 420 533 - -
Psa1g4632 636 Gene3D - 414 484 - -
Psa1g4632 636 PANTHER DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE 21 391 - -
Psa1g4632 636 CDD retropepsin_like 190 280 - -
Psa1g4632 636 Gene3D Acid Proteases 167 303 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4632 Psa-Chr1 353032651 353038883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4632 595 621 Cytoplasmic Ribosomal Protein Gene Family AT3G53430 81.481 3.09e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4632 - - egt:105956795 278.485