Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4629 ATGACTTGGTGCAATGAGTCTGATGTTAATGATCACATAAAGCTCAATGAAGAATTTCAAACCATAAAATGCCCCTCATGTGACCATGATATTGAAGTGAAAAATCAGGGTGGAATTCAAGATTTGCCTGGTTTACCAGCTGGAGTGAAATTTGATCCAAATGACATAGAAATATTAGAGCATTTAGAGGCAAAAGTGATGTCTGATGTGTGCAAAATTCATCCACTTATTGATGAGTTCATACCAACACTTCAAGGAGAAAATGGAATTTGTTATACACACCCAGAAAAACTACCAGGAGTTGGAAAAGATGGACAAATCAGACATTTTTTTCATAGGCCTTCTAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACTGATGAAGAAGGAGGTGAAACAAGATGGCACAAAACAGGAAAAACTAGGGCAGTATTTGTTAATGGTATTGTCAAGGGTTTTAAGAAGATACTAGTTCTCTACACAAACTATAGCAGGCAAGGAAAACCAGAGAAGACTAATTGGGTGATGCATCAATACCATATTGGTAGTAATGAAGAAGAAAGAGATGGAGAATTAGTTGCTTCAAAGGTGTTCTACCAAACACAACCAAGACAAAGTGGTAATTCCATTAATGTTAGGGATTCATATGACAAAATAATTAACAAAGGAAGTGGCCATAGTAATAGTACAACACCTAAGAATTTAGGTCTTGTGGAATCCTACAATGCTCCTTATACAAATTATGAGCATGTCAATGTTGGTCATAATAGGGAAAGCTCGCCGCAATTTACTCCAAACATGGTTATCCAACGTGATCGTGGATCTATTATTCGCTTGGCAATGGATGCAAACAAAGTATGA 873 0.3677 MTWCNESDVNDHIKLNEEFQTIKCPSCDHDIEVKNQGGIQDLPGLPAGVKFDPNDIEILEHLEAKVMSDVCKIHPLIDEFIPTLQGENGICYTHPEKLPGVGKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGGETRWHKTGKTRAVFVNGIVKGFKKILVLYTNYSRQGKPEKTNWVMHQYHIGSNEEERDGELVASKVFYQTQPRQSGNSINVRDSYDKIINKGSGHSNSTTPKNLGLVESYNAPYTNYEHVNVGHNRESSPQFTPNMVIQRDRGSIIRLAMDANKV* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4629 290 SUPERFAMILY NAC domain 39 204 IPR036093 GO:0003677|GO:0006355
Psa1g4629 290 Pfam No apical meristem (NAM) protein 46 185 IPR003441 GO:0003677|GO:0006355
Psa1g4629 290 Gene3D NAC domain 55 208 IPR036093 GO:0003677|GO:0006355
Psa1g4629 290 ProSiteProfiles NAC domain profile. 45 204 IPR003441 GO:0003677|GO:0006355
Psa1g4629 290 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 7 276 - -
Psa1g4629 290 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 7 276 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4629 Psa-Chr1 352915235 352921300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4629 1 214 NAC Transcription Factor Family AT4G28500 67.249 4.87e-109 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa1g4629 NAM 1.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4629 - - gmx:100809389 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4629 1 352915235 352921300 Psa1g4629 1 352915235 352921300 ECH
Psa1g4629 1 352915235 352921300 Psa7g2682 7 191299079 191302110 ECH