Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4625 ATGGGGTTAATCGATCTCAACACTACAGAAGATGATGAAACTCCTTATTCTGCTATTTCTTCTTCCTCTTCTTCTACTCACTCTGGTATAAGCACTTCTGCTTCAGCTATGGTTCTTCCTCCTCCGACTCCTCCTTCTCCTCCGACTCAGCCTTCTGTTTGTTTGGAGCTATGGCATGCTTGTGCTGGTCCTTTGATCTCTTTGCCCAAGAAAGGAAGCATTGTTGTGTATGTTCCACAGGGTCACTTTGAACAGGCTCATGATTTTCCTGTTTCTGCTTCTAGTATTCCACCTCATGTTTTCTGTCGTGTTCTTGATGTTAAGCTCCATGCAGAGGAAGGGAGTGATGAAGTCTATTGCCAAGTCTTGTTGGTTCCTGAAAATCAGCAAGTGGAGCAAAATGTTCGGGAAGGGGTAATCGATGCGGATGCGGAAGAGGAGGATACTGAAGCTATTGTGAAGTCAACAACTCCCCATATGTTCTGCAAGACTCTCACAGCTTCTGACACTAGCACTCATGGAGGATTCTCGGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGCCAGCAGAGACCTTCTCAAGAGCTTGTAGCTAAGGATCTGCATGGCCTGGAGTGGAGGTTTCGGCACATTTACAGGGGGCAGCCAAGGAGGCATTTGCTGACAACTGGGTGGAGTGCATTTGTGAACAAGAAGAAGCTTGTGTCTGGGGATGCTGTGTTGTTTCTTAGGGGTGATGATGGAGAACTGAGATTAGGGATCCGAAGGGCTGTTCAGTTGAAAAGTTCTGGTTCCTTTGCAGCTTCTGGCATGCAATTGGATCCGGGCTCTCTCATGGACGTTGTGAATGCCTTATCCAAAAGATCTGCGTTCAGTGTTTGCTACAATCCAAGGGTCAGTTCTTCAGATTTCATCATACCTGTTAACAAGTTCGTAAAGAGCCTTGATTGTTCTTACTCTGCTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAACGAAGATTCACTGGATTAATTGCTGGAATAAGTGATGTGGATCCTCATAGATGGCCTGGATCTAAATGGAAATGCCTATTGGTGAGGTGGGATGACATAGAAGCATCAAGGCATAATAGGGTTTCCCCTTGGGAAATCGAGCCATCTGGTTCTGCTTCCTCTACCAGTAACCTGATGGCAGCAAGTTTGAAGAGGAGCAGGATTGGATTCACTTCGTCCAAGCTAGAATTTCCAGTTCCCAATGGGATTGGTGTGTCAGACTTTGGGGAATCATTGAGGTTCCGAAAGGTCTTGCAAGGTCAAGAAATTATGGGCATTAATACTCCCTATGACAGTATTAATGCTCAGAGTCCCCGGTTATACGAGCTAGGGAGATGTTATCCCGGTTCAAACTGTTCCGGGATTGCCGCAACAGGAAATATCAGAATGCCACAAGCATCTTCTGATTTTCCCTGTAATGGCATAGGCTTTGGTGAATCTTTCCGATTCCAAAAGGTCTTGCAAGGTCAAGAAATTCTTCCGTGTCCACCACCCTACGGTCGATCCTCGTTTGACGAGTCCCGTGGAAATGGTTTCCTTGGACGCTACGATGGTTATCAACTGCTCGGTTCCAGAAACGGATGGCCAGCACAGATGCATGACAATTCTTCACATTTGCACGCGTCTGTTACAGCTGGACAAGTTTCATCTCCATCATCTGTTTTAATGTTCCAGCAGGCTGTTAATCCAGTTTCAAACTCTCGTTATGATAATCCTAATCGCAGTCAGGGTTCATACATATCTGAACTGAAAAATGGAATGTTCGCATCTTCCCTACTCGACAAGCCTATTCAGGAAAGCACAAATTCTCTCGGCGTACAGAATTTTCTTAATAACAATCAGTTGGATATTTCAAGGTCTCGTGATTCAGCCTCGGCACTAAGAGGCAATCAAGATATGAATTCGACATATAAAAGTGGCTGCAGACTCTTTGGATTTTCATTAACCGACGACACATATGTTGCAAATAAAGAAGCTGCTGTTGCCTCTACCATCACTTCTCAATTCAATAAGGACTACGAAGGCGGTTGA 2094 0.4537 MGLIDLNTTEDDETPYSAISSSSSSTHSGISTSASAMVLPPPTPPSPPTQPSVCLELWHACAGPLISLPKKGSIVVYVPQGHFEQAHDFPVSASSIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPENQQVEQNVREGVIDADAEEEDTEAIVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAVQLKSSGSFAASGMQLDPGSLMDVVNALSKRSAFSVCYNPRVSSSDFIIPVNKFVKSLDCSYSAGMRFRMRFETEDAAERRFTGLIAGISDVDPHRWPGSKWKCLLVRWDDIEASRHNRVSPWEIEPSGSASSTSNLMAASLKRSRIGFTSSKLEFPVPNGIGVSDFGESLRFRKVLQGQEIMGINTPYDSINAQSPRLYELGRCYPGSNCSGIAATGNIRMPQASSDFPCNGIGFGESFRFQKVLQGQEILPCPPPYGRSSFDESRGNGFLGRYDGYQLLGSRNGWPAQMHDNSSHLHASVTAGQVSSPSSVLMFQQAVNPVSNSRYDNPNRSQGSYISELKNGMFASSLLDKPIQESTNSLGVQNFLNNNQLDISRSRDSASALRGNQDMNSTYKSGCRLFGFSLTDDTYVANKEAAVASTITSQFNKDYEGG* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4625 697 PANTHER AUXIN RESPONSE FACTOR 45 687 - -
Psa1g4625 697 Pfam B3 DNA binding domain 161 262 IPR003340 GO:0003677
Psa1g4625 697 SMART B3_2 161 263 IPR003340 GO:0003677
Psa1g4625 697 MobiDBLite consensus disorder prediction 10 32 - -
Psa1g4625 697 CDD B3_DNA 159 261 IPR003340 GO:0003677
Psa1g4625 697 MobiDBLite consensus disorder prediction 1 32 - -
Psa1g4625 697 Gene3D - 159 263 IPR015300 -
Psa1g4625 697 ProSiteProfiles B3 DNA-binding domain profile. 161 263 IPR003340 GO:0003677
Psa1g4625 697 Pfam Auxin response factor 287 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa1g4625 697 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 45 687 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa1g4625 697 Gene3D - 323 397 - -
Psa1g4625 697 SUPERFAMILY DNA-binding pseudobarrel domain 154 268 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4625 Psa-Chr1 352646252 352650659 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4625 160 515 B3 DNA Binding Superfamily AT2G33860 60.388 4.37e-143 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa1g4625 B3 3.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4625 K14486 - gmx:100789906 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4625 1 352646252 352650659 Psa1g4625 1 352646252 352650659 ECH