Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4599 ATGGCTTCTTCTAATAGACACTGGCCAAGCATGTTTAAGTCTAAGCCCTGCAACACTCATCACCAATGGCAGCATGACATCAACTCTTCTCTCATTTCATCTTCTTCTTGTCACAGAACTCCTTACTCCTCAGGTTGTGAAGAGAGAAGTCCTGAACCGAAGCCTAGGTGGAATCCAAAACCTGAACAGATTCGGATACTGGAAGCTATATTCAACTCAGGAATGGTGAATCCACCCAGAGAAGAAATTAGGAAGATTAGAGCACAGTTACAAGAGTATGGTCAAGTTGGTGATGCTAATGTGTTTTACTGGTTCCAGAACCGCAAATCAAGAAGCAAGCATAAGCTTCGTCATCTTCAAAACCAAAACAACTCAAAGAATCTTCAGAATCAGAATCAGAATCCGGAACCGCCACAGCAACCACAGCAAAACAATCATGTTTCTTCACTTGCTCAAACCACTGTTGCACCATCATCTTCATCTTCTTCCTCTGAGAAATCTCCGCCGAAGGAGTTAATACCTTCCAAGGTGTTTTCTCTTGGTTTCCCTAACATCAATGACGCTGTGCCTAATTCTCCATCTGTTTCTTCTGTGAACCATAACTATTTTCAGACACAAAACGAAGCCAATCTTGTTCCACCGCAAGCAAGAGTAACTGCACCACCCACTGAGACTTTCTTCTTCCCAGTGCAAAATCATGGACAAGGTGTTGTTCAACCTAATAATGTTACATCACAAGGGTTTTGCTTCTCTGAACTCTCAAATGTGGTTCATGCTCAACAATCACATGGTCAACAACAACATCAACAGCAGCAAAACACGGGTCATTGCACTACTAGTTTTCTACTCAGTGAGATCATGAACAACCATGGTGCTAATTCCTCAAAGAAACATCAAGATCAACAAGATCAGGATAAGCCTGTCAAAATAGTGCACCAAATCCCTCATTTTAACTTGTGTTTCACACCCACACCCACAACTACTACTACTGTTGTACCTCCTACTACCTCCTCCACCATCACTGTTCCATCCCCTATCATTTCTCAACTACAAGGCATTGGAGAAACAGGTGTTCCCGCAAGATTAATGGTGTTCATCAATGATGTGGCGTTTGAGGTAGCATCTGGACCTTTCAATGTTCGTGAAGCATTTGGGGATGATTCTGTGCTCATTCATTCAACTGGCCAACCAGTTTTAACAAACCAATGGGGTGTAACTCTCCATTCACTCCAGCATGGTGCATGTTATTATCTGATATAG 1260 0.4246 MASSNRHWPSMFKSKPCNTHHQWQHDINSSLISSSSCHRTPYSSGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNQNNSKNLQNQNQNPEPPQQPQQNNHVSSLAQTTVAPSSSSSSSEKSPPKELIPSKVFSLGFPNINDAVPNSPSVSSVNHNYFQTQNEANLVPPQARVTAPPTETFFFPVQNHGQGVVQPNNVTSQGFCFSELSNVVHAQQSHGQQQHQQQQNTGHCTTSFLLSEIMNNHGANSSKKHQDQQDQDKPVKIVHQIPHFNLCFTPTPTTTTTVVPPTTSSTITVPSPIISQLQGIGETGVPARLMVFINDVAFEVASGPFNVREAFGDDSVLIHSTGQPVLTNQWGVTLHSLQHGACYYLI* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4599 419 MobiDBLite consensus disorder prediction 128 171 - -
Psa1g4599 419 Pfam Homeodomain 54 114 IPR001356 GO:0003677
Psa1g4599 419 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 419 IPR044557 GO:0003700|GO:0050793
Psa1g4599 419 Gene3D - 54 120 - -
Psa1g4599 419 CDD homeodomain 53 115 IPR001356 GO:0003677
Psa1g4599 419 ProSiteProfiles 'Homeobox' domain profile. 50 115 IPR001356 GO:0003677
Psa1g4599 419 MobiDBLite consensus disorder prediction 128 169 - -
Psa1g4599 419 SMART HOX_1 52 119 IPR001356 GO:0003677
Psa1g4599 419 MobiDBLite consensus disorder prediction 42 61 - -
Psa1g4599 419 SUPERFAMILY Homeodomain-like 50 118 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4599 Psa-Chr1 351532601 351535444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4599 224 419 Wox Gene Family AT5G45980 33.495 1.43e-21 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Psa1g4599 Homeodomain 6.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4599 - - mtr:MTR_2g015000 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4599 1 351532601 351535444 Psa1g4599 1 351532601 351535444 ECH