Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4596 ATGTTCCATAAACTTTCCTCTAAGCCACATAATATTCTACTGCCCCACATTTGCCAAATTGTTATACTGCTACATATAATGCAATCCTATAACCACTCGACACAATCTCCTCAAGTTTATTCCCTTCTTAAAAACCATAACAACACCAAAGGCCCAAAAAGAGAGAAACAAACTCAAACAAAAAAAAAAAAACAGAGCAAAACAGAGAAAAACAGAGCCATGGTTTTATCATCCCAATCCCAAACAGAACTACCCTTAAACGAAAACGATTCACAAGACATGGTAATATACCAAGTCCTACACGAGGCCAATGCTCTTACCAACACATTTCTCCCACAAAGAAACCACCATCATCAAGCTCTGAGTGCCTTAGAACCCACAAAAGCTATCACCAAGAAACACTACAGAGGAGTTCGGCGTCGTCCGTGGGGGAAATACGCGGCGGAGATTCGCGACTCGGCTCGTCATGGTACAAGAATCTGGCTTGGAACTTTTCAAACGGCTGAAGAAGCTGCTATGGCTTATGACAGAGCTGCTTTCGAAATGAGAGGTTCAAAGGCTTTGCTTAATTTCCCAGCTGAAACTGTTGCTGCAGCTTCCATGAAAATGGAATTTCCTGTTTCTAAACTCAACTTGAATAATCCTAATCCTAATCCTAATCATGATTCATCGCAAAATTGA 681 0.4097 MFHKLSSKPHNILLPHICQIVILLHIMQSYNHSTQSPQVYSLLKNHNNTKGPKREKQTQTKKKKQSKTEKNRAMVLSSQSQTELPLNENDSQDMVIYQVLHEANALTNTFLPQRNHHHQALSALEPTKAITKKHYRGVRRRPWGKYAAEIRDSARHGTRIWLGTFQTAEEAAMAYDRAAFEMRGSKALLNFPAETVAAASMKMEFPVSKLNLNNPNPNPNHDSSQN* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4596 226 ProSiteProfiles AP2/ERF domain profile. 134 192 IPR001471 GO:0003700|GO:0006355
Psa1g4596 226 PRINTS Ethylene responsive element binding protein signature 135 146 IPR001471 GO:0003700|GO:0006355
Psa1g4596 226 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Psa1g4596 226 Gene3D AP2/ERF domain 133 194 IPR036955 GO:0003700|GO:0006355
Psa1g4596 226 CDD AP2 133 193 IPR001471 GO:0003700|GO:0006355
Psa1g4596 226 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 53 201 - -
Psa1g4596 226 PANTHER DNA-BINDING DOMAIN 53 201 IPR044808 GO:0003700|GO:0009873
Psa1g4596 226 SUPERFAMILY DNA-binding domain 134 193 IPR016177 GO:0003677
Psa1g4596 226 SMART rav1_2 134 198 IPR001471 GO:0003700|GO:0006355
Psa1g4596 226 Pfam AP2 domain 134 184 IPR001471 GO:0003700|GO:0006355
Psa1g4596 226 MobiDBLite consensus disorder prediction 48 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4596 Psa-Chr1 351426643 351427906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4596 84 196 AP2-EREBP Transcription Factor Family AT3G23240 53.846 2.34e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa1g4596 AP2 4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4596 K13433 - gmx:100811533 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4596 1 351426643 351427906 Psa1g4596 1 351426643 351427906 ECH