Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4595 ATGATATATATTTCTTTACCTCTTCATTTATGTGTTTATACCAACATGGAGAATATTCACGTTCACAATAGTAATAATCATGCAACTACTGAAGAGACTATTCTTGAGAATGTTTGGGCTAAAATTACAAGCAATGATGATGGAAGAAGAAATGGAAATGGAGAATGTTCTAAGTCTAGCACATGGGAAGATTTGCCTAATCTTGGTGAAAGAGGTAGTGGATGTGGATCAGTTGAAATTCTTCAAAGGTTGCCAAGCTTAGGAAGATGGATATCAATGGGAGCTGATTTTTGGGAAGAAGTTTTAAGCAATACAGAAGATTTTTCTAGCAACAAAAGCATGGAAAAAAATGAAAGTGTTAGTGATTCAAAGAAAAAAGTAGAAGATGTTGTCGTGAGAAAAGAGAGAAAAAGAGATGAAAAACATTATAGAGGAGTAAGGAGAAGGCCATGGGGTAAATATGCAGCTGAGATAAGAGATTCTTCAAAGAAAGGTGCAAGAGTTTGGCTTGGTACATTTGATAAAGCTGAGGAAGCTGCTTTAGCTTATGATAAAGCTGCTTTGAGAATTAGAGGTTCAAAAGCATGTCTTAACTTCCCAATAGAGAGAGTTACAAATACAAATACAAACAGTGAAAGGTTATTGGATTCTAGGAAGAGAGGGTTTGCTGATGTGATGAATATTGAAGAGCCTGCAACAAAGAAGATGGCAGGGTTGGAAGAAATGTTGGAAAATGATGTTTTTGTATTTCAGGACTTGGGAGTTGATTACTTGGACAGTTTGTTGTCTTCATTTTGA 798 0.3559 MIYISLPLHLCVYTNMENIHVHNSNNHATTEETILENVWAKITSNDDGRRNGNGECSKSSTWEDLPNLGERGSGCGSVEILQRLPSLGRWISMGADFWEEVLSNTEDFSSNKSMEKNESVSDSKKKVEDVVVRKERKRDEKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDKAEEAALAYDKAALRIRGSKACLNFPIERVTNTNTNSERLLDSRKRGFADVMNIEEPATKKMAGLEEMLENDVFVFQDLGVDYLDSLLSSF* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4595 265 Pfam AP2 domain 142 192 IPR001471 GO:0003700|GO:0006355
Psa1g4595 265 Gene3D AP2/ERF domain 141 202 IPR036955 GO:0003700|GO:0006355
Psa1g4595 265 SMART rav1_2 142 206 IPR001471 GO:0003700|GO:0006355
Psa1g4595 265 PRINTS Ethylene responsive element binding protein signature 143 154 IPR001471 GO:0003700|GO:0006355
Psa1g4595 265 PRINTS Ethylene responsive element binding protein signature 182 202 IPR001471 GO:0003700|GO:0006355
Psa1g4595 265 SUPERFAMILY DNA-binding domain 142 202 IPR016177 GO:0003677
Psa1g4595 265 ProSiteProfiles AP2/ERF domain profile. 142 200 IPR001471 GO:0003700|GO:0006355
Psa1g4595 265 CDD AP2 141 201 IPR001471 GO:0003700|GO:0006355
Psa1g4595 265 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 36 265 - -
Psa1g4595 265 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 36 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4595 Psa-Chr1 351354984 351356126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4595 137 264 AP2-EREBP Transcription Factor Family AT3G23240 48.905 4.67e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa1g4595 AP2 4.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4595 - - lang:109334345 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4595 1 351354984 351356126 Psa1g4595 1 351354984 351356126 ECH