Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4590 ATGCATTGCCTTTCAACTATTCCTCAAGCACTAGCAAGAGTTTGGCTATTCTTTTTCTTACTCACTCCTTCTGTTCTCATTTTTGGTTTCCGAGATGAGACAAACAAAGTTATATCCATTGGGGTGACCATTGATGTTAATTCTCGTATTGGGAAAGAACAAGAAGTAGCCATGGAAATTGCAGCCCAGAAATACAACATCGCTTCAAAGGAATACAACCTGGCTCTCTATTTTCAGAACTCTGCCAAGGATACCCTCAGGGCCATCACACTTGCTGAAGAGATGATTAAGGTGCAAAAGGTGCAAGTGATTATAGGGATGCACACATGGCCAGAAGCAGGTATAGTAGCTGAAATAGGAAGCAAAGCTCAAGTTCCTATCATATCCTTTGCAGCACCTACCATAATGCCACCATTGATGAAAACTCGATGGCCTTTTCTGGTGGGACAAGCAAACAAAGGTACATCATATATAAAATGCATTGCAGACATAGTGCAGGCATATAGCTGGAAAAGAGTAGTAGTAATCTACGAAGATGACGGGTACGGGGGAGATTATGGGATGCTAGCTCTGCTAGCTGAGGCCCTTCAGGATGTGGATTCAATGATTGAACACCGCTTAGTCCTTCCCCCAATCTCTTCTATACATGATCCAGGAGAGTTAGTTAGTGAAGAGATGATTAAGTTAAAACAAGCACAATCTCGGGTGTTCATAGTGCTGCAATCATCGTTAGAAATGACAATCCATTTGTTCAAAGAAGCTTCAAAAGTTGGACTGGTGGGTAAAGAATCAGTTTGGATAATCCCAGAGAGCGTAACAAATTTGATGGACTCTGTCGATAAATCTGCTATTTCCTATATGGAAGGAGCTTTAGGAATTAAAGCCTACTACTCAGAGAGAAGCAAGGATTATCAAGACTTTGAGGCTCAGTTCAGGAGAACTTTTTGGTTAAAGAATCCAGAGGAAGATAACCGATACCCAGGATTTTATGCTCTACAAGCATATGATAGCATTAATATTGTAACTCAAGCAATCGACAGAATGACCAGTAGAAACAATAGCAGCCCAAAGAGTTTGCTAAGAGAAATACAGTCTAGCAATTTCGTTGGTTTGAGTGGCCATATTCAACTTGAAGATGAACAACTCATGCAGAAGAATCTTGTATTAAGAATTGTAAATGTGGCTGGGAAGAGTTACAAGGAATTATGCTTTTGGACTCAACAACATGGCTTCACAACAGTCCTCCATACCGGACAAGGTGGAAACAAGGTTGCTGGAAATACAGAATGTTTCAGGGGTGTACGCTGGCCTGGGAATTTGGACCGCGATCCAAAGGGGTGGAACATGCCTACCAAACAATATCCATTGAAAATTGCAGTCAGAAGCAGAACCTCGTTTTACAAGTTTGTCAAGGTTGAGTATGGCCATAATGGAAAGGATGATAAATATAGTGGATTTTGCATTGACATTTTCGAGCAAGTACAGAAACTTCTGGGGTACGATCTTCCATATAAATATCATGCCATCAATGGAACCTATAACGATTTGGTTCAGCTTGTCTATAACAAGACTTTTGATGCTGTTATTGGAGACATGACCATAATAGAGGAAAGATTGAAGTATGTGGATTTTACAGTGCCATATGCAGAATCAGGATTGTCAATGATAGTTCCAATGAAGTCTGGAGAATCAGCATGGATGTTTATGAAGCCATTTACCTGGGAATTGTGGCTGGTTACAGATGCAATCTTGATTTACACAATGTTAGTTGTTTGGTATCTTGAGAGAGAACCCAACCCAGAGTTCCATGGAAACTGGAAGCTCCAGCTCAGCACAGCCTTTTGGTTTACTTTTTCCTCTCTGTTCTTTGCTCATAGAGAAAAAATGCACAGCAACTTAACTCGAGTGGTGATGTTCTCGTGGCTTTTTCTTGTATTGGTTCTCACCTCATGCTACACAGCTAGTCTTTCTTCAATGCTCACAGTTAAGCAGTTGCGACCAAAAGTCACGGACATTCAATGGCTGAAGAACAACAACAAGAAAGTTGGTTGTGACGGCGACTCATTTGTTAGGACGTTCCTAGAGAAAGTTGAAAAGTTCAAGCCAGAGAATATCATAAACATAACCAACGAGTACAAGTATGATGAAGCATTCGCCAACAACAGCATAGCAGCTGCTTTTCTTGAGCTCCCATATGAAAAAGTATTCATTAGCGAATACTGCAAGAAATACACCGGCTTCATTCCTAGAAATAGATTTGGAGGATTGGGCTTTATGTTCCAGAAAGGCTCTCCACTGACCAGAGATTTCTCTAAAGCTATATTACATCTCTCAGAAAAGGCAGAATTGAAGAGATTGGAAGAACAGTGGTTAATTACATCACAAGATTGCTCCAACGTGACGTCCTCCAGTGATTCGGATAGTTTGAATCTTGGAAGCTTATGGGCTCTATATGTCATCTCTGGTGCCACTTCTACTATTTGTGTACTAATATCAGCCATCAAGTGTCTAAAATCCAGGGAATCACATGAAGACGTTCCACCAGAAGGCAACGGAACACCAAGTGATGAAAGGGTGTGGAAAGCGGTTATTACATTTGCAAAGCAGATTCGTAGCAAAAAGCTTGACAATTCAAACAAGGTACAGGATGTAACTGACTCTTCTTCGAGATCAGGTGATGTGAGCATCAGTGATACACCTGAGCATTCACAGGAAATGGCTTCTCAACCAAAAGAAGTACTAGTACATATAACAACAGACGACATAGGAACCATGGAACCATATATACCTCAAAATAATTGTCATATTAGACACGGTAAAAGCTCGTCTTAG 2832 0.4075 MHCLSTIPQALARVWLFFFLLTPSVLIFGFRDETNKVISIGVTIDVNSRIGKEQEVAMEIAAQKYNIASKEYNLALYFQNSAKDTLRAITLAEEMIKVQKVQVIIGMHTWPEAGIVAEIGSKAQVPIISFAAPTIMPPLMKTRWPFLVGQANKGTSYIKCIADIVQAYSWKRVVVIYEDDGYGGDYGMLALLAEALQDVDSMIEHRLVLPPISSIHDPGELVSEEMIKLKQAQSRVFIVLQSSLEMTIHLFKEASKVGLVGKESVWIIPESVTNLMDSVDKSAISYMEGALGIKAYYSERSKDYQDFEAQFRRTFWLKNPEEDNRYPGFYALQAYDSINIVTQAIDRMTSRNNSSPKSLLREIQSSNFVGLSGHIQLEDEQLMQKNLVLRIVNVAGKSYKELCFWTQQHGFTTVLHTGQGGNKVAGNTECFRGVRWPGNLDRDPKGWNMPTKQYPLKIAVRSRTSFYKFVKVEYGHNGKDDKYSGFCIDIFEQVQKLLGYDLPYKYHAINGTYNDLVQLVYNKTFDAVIGDMTIIEERLKYVDFTVPYAESGLSMIVPMKSGESAWMFMKPFTWELWLVTDAILIYTMLVVWYLEREPNPEFHGNWKLQLSTAFWFTFSSLFFAHREKMHSNLTRVVMFSWLFLVLVLTSCYTASLSSMLTVKQLRPKVTDIQWLKNNNKKVGCDGDSFVRTFLEKVEKFKPENIINITNEYKYDEAFANNSIAAAFLELPYEKVFISEYCKKYTGFIPRNRFGGLGFMFQKGSPLTRDFSKAILHLSEKAELKRLEEQWLITSQDCSNVTSSSDSDSLNLGSLWALYVISGATSTICVLISAIKCLKSRESHEDVPPEGNGTPSDERVWKAVITFAKQIRSKKLDNSNKVQDVTDSSSRSGDVSISDTPEHSQEMASQPKEVLVHITTDDIGTMEPYIPQNNCHIRHGKSSS* 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4590 943 PIRSF IGluLR_plant 9 925 IPR017103 -
Psa1g4590 943 PANTHER GLUTAMATE RECEPTOR 3.4 31 912 - -
Psa1g4590 943 Pfam Receptor family ligand binding region 56 389 IPR001828 -
Psa1g4590 943 SMART GluR_14 457 793 IPR001320 GO:0015276|GO:0016020
Psa1g4590 943 MobiDBLite consensus disorder prediction 877 911 - -
Psa1g4590 943 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 912 - -
Psa1g4590 943 Gene3D - 565 704 - -
Psa1g4590 943 Pfam Bacterial extracellular solute-binding proteins, family 3 479 791 IPR001638 -
Psa1g4590 943 Gene3D - 733 798 - -
Psa1g4590 943 SUPERFAMILY Periplasmic binding protein-like II 436 791 - -
Psa1g4590 943 MobiDBLite consensus disorder prediction 881 906 - -
Psa1g4590 943 CDD PBP1_GABAb_receptor_plant 39 415 IPR044440 -
Psa1g4590 943 Gene3D - 450 564 - -
Psa1g4590 943 SUPERFAMILY Periplasmic binding protein-like I 35 447 IPR028082 -
Psa1g4590 943 Gene3D - 158 326 - -
Psa1g4590 943 CDD GluR_Plant 455 791 - -
Psa1g4590 943 Pfam Ligand-gated ion channel 792 822 IPR001320 GO:0015276|GO:0016020
Psa1g4590 943 Gene3D - 33 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4590 Psa-Chr1 351220560 351223980 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4590 8 831 Ion Channels AT2G29120 32.558 1.14e-144 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4590 - - mtr:MTR_2g015270 1472.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4590 1 351220560 351223980 Psa1g4590 1 351220560 351223980 ECH