Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4589 ATGCAAATTGCAGCTCAAAGTTTCAATATCCATTACAACAATCAAAACTTGGTAATTTTCTTCCGTGATTCTGGTCGAAACCCTTTACAAGCAGCTTCAGTTGCTGAAGAATTAATCACTAAAGAAAAAGTTAAAGTGATTATCGGCATGGAAACATGGCAAGAAGCAGCTCTTGTTGCTGACCTTGGAGCCAAGTTTCAAGTACCAATAATTTCATTTTCTTCTCCACCATCAGTCCCATCATCATTAGTGCAACTTCGTTGGCCTTTCTTGATTCAAATGTCACAAAATCTTTCTGCACAAATGAACTTCATAGCTGATATGATTCATGCTTTCAACTCTCAGAAAGTTATAGTTATATATGAAGACAACCCTTATAGTAGCGAATCTGGAATGTTAAGCCTCTTATCCGAGGCTCTCGAAAAGTTTAACTTGCAGATTGAGTATCTATTAGCTCTTCCACCATTCACTTCTTTATCTGATCCAAAAGGGTTTGTTCTTGATGAATTGCTGAAGTTGTTGCCGTTAAAATCTCGGGTTTTTGTTGTACTTCAAGCATCGTTACCTATGGTGAACCATTTGTTTAGAGAAGCTAAGAAAATTGGATTATTGGAGAAAGAATCATCTTGGATAATCAATGAGGAGATTACAAGCATGTTGGAGAATGTAGATAAATCTGTTTTATCTTCTATGAAAGGTGTTTTGGGAATCAAAACCAACTATTCTACAAGCTCTAGTGCTTATACTCATTTGCAGGAAAAATTTCAAGCTGAGAATACAGAAAAAGTTGAGTTCAAACCAGGATCAAATGTTTTGCTAGCTTATGATAGCATCACAATTGTCACAAAGGCTTTGGAGAAAATGAATACTAATTCTAGTAGCTCAAAGACGTTATTGCAGGAGATGTTATCCTCCGATTTCAATGGCTTAATTGGTGATATAAGATTCAAAGAAAGACAACTATCCTACACTCCAATATTAAGAGTCATCAAAGTGGTTGATAATGATAAGAAAGATACTGAATTGGACTTTTGGACACCAAAGTTGAAGTTTGCTAGATCTCTTAGAGAGAAAACAAATGATGGTACTAAAGAAGAAAGATCAAATGACTGTCTACCTAAGAAATGGAAAATACCGAATGATACAAACCCTTTACAAGTTGCAATTCCTATGAATCCCGCATTTGATAACTTTGTGAAAGTCTCTCAAAATCAAACTCCTACCGGTTTTTGTATTGAACTTTTTAAAGAGATTCGAAAAATTCTGAGTGAGCAGTATTCTGGTCTTCCCTATAATTTTATCCCTTTCTCCGAATCTTTTGATGATATTTTGCTTAAAGTAAAAGATGAGACCTATGATGCTATTGTAGGAGATGTAACAATACTTGCCAAACGAGCAAGAGAGGTATCATTCACTCAACCATATACTGAATCAGGCTTATCACTCATACTTCCAGCAGAAACTGAAGATTCAGCATGGTTGTTTATGAAACCATTTAGCTCGGTAATGTGGATTGCAACTACTGGTATCCTAATCTACACAATGATTGCCGTTTGGTTCTTAGAACACCACTTGAATCCTGAATTTGGTGGACCATTGAAAACACAAATCAGCACGACTCTATGGTTTGCGTTTTCTTCTCTATTTTTTGCACAGAAGGAGAAAATAAACAGCAACTCAGCAAGAGTAGTAGTTGGAGTATGGTTATTTCTTGTGTTTGTTCTGACCTCAAGCTACACTGCAAATCTTTCATCATTGCTTACTGTCCAAAAATTGAGGTCTGACAGAGACATTGAATGGCTTAAACAAAACAATCTATCAGTTGGTTGTGATAACACTAGTACCTTTGTAAAGGACTACTTGATCCAAGTGTATAAATTCTCTACGCATCAAGTTGTAGAAGTTGGGGATGAACAAGACACTTTGGATAAATTCAAGAACAAAAAAATTTCTGCTCTATTTGCTGAGAGCCCATACGAGAAGGTTTTCTTGAATAAATACTGCAAAGAATACACTTCAACTACAGCAGCCTATAAATTTGGAGGATTGGGATTTGTTTTTCAAAAAGACGATCCAATGGCAAAAGACTTTTCTGAAGCAATTTTAACACTGGCAGAAAATGGAAAATTAAAAGATTTGGAAAATATATGGTTAACACCTTCCAATAAATGCTCAAACAACTCACCATCTCCAGAAGAAACTGAGAGTCTGACTCTTGACAAATTTTGGGGACTCTATGTCATATGTGCTGCCACATCCACCATCTGCTTACTACTAGCTTTGTTGAAGAAGCGTTTACGTAACCATAACCACTATGAAGAAGCTGATCAACTTCCTCAAGGAAGTGTAATCTCCGAATCTGATGATGATAATAATAATAATTCTCAGAGAGCAATTAGAGTTGGTACAGGTTTAAACATTGAGAATCTCATTAAATTAAATAAATCTGCAACTTTTGGTGGACGTGTAAAAGAAGGTGTACGTCGTAGAAATTCACCAAAATTGGAGAGTATAAGCATTTCTGATGAACAGGGCGATCTTCCTCACTCCCAATCAGCTGCCATGCCATAG 2571 0.3613 MQIAAQSFNIHYNNQNLVIFFRDSGRNPLQAASVAEELITKEKVKVIIGMETWQEAALVADLGAKFQVPIISFSSPPSVPSSLVQLRWPFLIQMSQNLSAQMNFIADMIHAFNSQKVIVIYEDNPYSSESGMLSLLSEALEKFNLQIEYLLALPPFTSLSDPKGFVLDELLKLLPLKSRVFVVLQASLPMVNHLFREAKKIGLLEKESSWIINEEITSMLENVDKSVLSSMKGVLGIKTNYSTSSSAYTHLQEKFQAENTEKVEFKPGSNVLLAYDSITIVTKALEKMNTNSSSSKTLLQEMLSSDFNGLIGDIRFKERQLSYTPILRVIKVVDNDKKDTELDFWTPKLKFARSLREKTNDGTKEERSNDCLPKKWKIPNDTNPLQVAIPMNPAFDNFVKVSQNQTPTGFCIELFKEIRKILSEQYSGLPYNFIPFSESFDDILLKVKDETYDAIVGDVTILAKRAREVSFTQPYTESGLSLILPAETEDSAWLFMKPFSSVMWIATTGILIYTMIAVWFLEHHLNPEFGGPLKTQISTTLWFAFSSLFFAQKEKINSNSARVVVGVWLFLVFVLTSSYTANLSSLLTVQKLRSDRDIEWLKQNNLSVGCDNTSTFVKDYLIQVYKFSTHQVVEVGDEQDTLDKFKNKKISALFAESPYEKVFLNKYCKEYTSTTAAYKFGGLGFVFQKDDPMAKDFSEAILTLAENGKLKDLENIWLTPSNKCSNNSPSPEETESLTLDKFWGLYVICAATSTICLLLALLKKRLRNHNHYEEADQLPQGSVISESDDDNNNNSQRAIRVGTGLNIENLIKLNKSATFGGRVKEGVRRRNSPKLESISISDEQGDLPHSQSAAMP* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4589 856 MobiDBLite consensus disorder prediction 837 856 - -
Psa1g4589 856 Gene3D - 493 634 - -
Psa1g4589 856 SUPERFAMILY Periplasmic binding protein-like II 373 719 - -
Psa1g4589 856 SUPERFAMILY Periplasmic binding protein-like I 10 346 IPR028082 -
Psa1g4589 856 SMART GluR_14 384 720 IPR001320 GO:0015276|GO:0016020
Psa1g4589 856 PANTHER GLUTAMATE RECEPTOR 1 854 - -
Psa1g4589 856 Pfam Ligand-gated ion channel 720 751 IPR001320 GO:0015276|GO:0016020
Psa1g4589 856 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 854 - -
Psa1g4589 856 Gene3D - 97 244 - -
Psa1g4589 856 Gene3D - 380 492 - -
Psa1g4589 856 Pfam Receptor family ligand binding region 13 330 IPR001828 -
Psa1g4589 856 MobiDBLite consensus disorder prediction 824 856 - -
Psa1g4589 856 Pfam Bacterial extracellular solute-binding proteins, family 3 396 719 IPR001638 -
Psa1g4589 856 Gene3D - 639 726 - -
Psa1g4589 856 Gene3D - 3 323 - -
Psa1g4589 856 PIRSF IGluLR_plant 1 853 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4589 Psa-Chr1 351214782 351218511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4589 17 771 Ion Channels AT2G29120 33.126 1.39e-118 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4589 - - mtr:MTR_2g015290 1196.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4589 1 351214782 351218511 Psa1g4589 1 351214782 351218511 ECH