Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4582 ATGGCTGTGTCATTACTGAGAAACCGTTCCATGTCGTCGGTAAACAATTTGTTAACCAATGCTCTTCGTCGTCTCTCTTCTGCACAGGTTTCAAACACCATTCCTGATGAGGCACGCGAGAGAATGATGTATTCAGACATAAACTCACAGATTGGGAGTTGTATGCCTCTCTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAACTGAACCCAGGGCAAGGTGGAAAGCTTGTCCGAGCAGCCGGAACCAATGCAAAGATTTTGAAAGAGCCCACATCAGCATACTGTTTAGTCCAACTTCCATCTGGTGTTAAAAAGTTGATTGATTCTCGATGCAGGGCCACTGTTGGTACTGTCTCTAATCCAACTCATGGGGATCGCAAGCTTAGGAAGGCTGGCCATAGCAGATGGCTAGGTCGGAGACCGGTTGTTCGGGGGGTGGCTATGAATCCTGTTGATCATCCTCATGGTGGAGGAGAGGGCAAGAGCAAGAGTAGTGGTGCGTGGGGGAAAGGATCCCGTACACCTTGGGGTAAGCCGACTAAGGGTGGTTTCAAGACTGGACCTCTTAAGCGCAAAAAGTAG 591 0.4839 MAVSLLRNRSMSSVNNLLTNALRRLSSAQVSNTIPDEARERMMYSDINSQIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTNAKILKEPTSAYCLVQLPSGVKKLIDSRCRATVGTVSNPTHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGAWGKGSRTPWGKPTKGGFKTGPLKRKK* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4582 196 ProSitePatterns Ribosomal protein L2 signature. 144 155 IPR022671 GO:0003735|GO:0005840|GO:0006412
Psa1g4582 196 MobiDBLite consensus disorder prediction 151 196 - -
Psa1g4582 196 PANTHER 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL 43 195 - -
Psa1g4582 196 Gene3D - 45 121 IPR014722 -
Psa1g4582 196 SUPERFAMILY Translation proteins SH3-like domain 51 186 IPR008991 -
Psa1g4582 196 SMART Ribosomal_L2_C_2 49 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Psa1g4582 196 Gene3D Ribosomal protein L2, domain 3 122 196 IPR014726 -
Psa1g4582 196 Pfam Ribosomal Proteins L2, C-terminal domain 50 180 IPR022669 GO:0003735|GO:0005840|GO:0006412
Psa1g4582 196 PANTHER RIBOSOMAL PROTEIN L2 43 195 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4582 Psa-Chr1 350857353 350859466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4582 48 161 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 44.167 1.45e-23 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4582 - - gmx:100792418 300.441