Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4551 ATGTCAACTCCTTCACCATCTTCTTCTTCTACAATTTGGATTCTGTCTAACATCAAGCTTCAATTCTTCACTCGTATCAAACGTTTTCTCCAATCCAAAGCAACCCGAAAGCGCTGCGACGTCTCCGAACAGCCTCACAAAGTTGAACAAATTTCAACACTTCAAGTCGCTGACAACCATGTTCAGGATGAGGAGATGGAGGAGGTGGAGGAAAGTGAAATTCTGCTGCAAAAGACCGTCAAAATGCTTCACTTTGGAACCTGGGAAGAGAAAGAGGTTGCTGCAAAAGAGATTGAAACTTTAGTTAAACAAGATGTCAAAGTTAGAAAGTTGATAACAGAACTTGGGGTCGTGCCGGTTTTGGTATCCATGGTGGCGTCCACGGTGCTTAGTCGCCGGAGAGCAGGGCTGTCGGCGTTGATCTACCTTGCCGATGGAACTTACACGAACAAAGCTATGATAGTGGAGGCAGGAATATTATCCAAACTACCTAAGACAATTGACCTTATAGATGAGTCAACCATGAATGAGTTTGCAGAGTTAGTTCTATCATTATCATCACTTGCAAACACACAATTCCCCTTTCCTTCATTAGATTTTGTACCATTTCTCAAAGACATTCTTAAAAAAGACACAAATGTTGACACCAAAAGATCATGTTTAGGAGCCTTATACAACATATCAACCATGCTGGAAAATGCAAGCACTTTGGTTTCTTATGGTCTTGTCCCAATTTTATTGGAACTTTCTTTAGTGAAAGAAATTTCAGAAAAAGCACTTGCTACTTTAGGTAACTTGTTGGTTACTCTAATGGGAAAAAAGGAAATAGAGAAAAGTTCAATGGTGCCACAAAATTTTGTTGAGGTTTTGTCATGGGAAGACAAACCAAAATGTCAAGAGTTGTCGGTTTATATTTTGATGATTTTGGCACATCAAAGTTTGGATCAAAGAGAGAAAATGGCACAAGCTAGGATTGTTCCTATGCTTCTTGAAGTTGTTTTGTTGGGGAGTCCTTTAGCTCAAAAGAGAGCTATGAAACTATTGCAATGGTTTAAGAATGAGAGGCAAGTTAAGATGGGGCCACATTCTGGTCCACAAACACCAAGATTTGCAATGGGGTCACCTTTGAATCAAAGAGATAGTAAAGAAGGGAAGAATTTGATGAAGAATTTGGTGAAACAAAGTTTGCATAAGAATTTGGAAATAATAACTCAAAGAGCGAATTTAAATGGAGAGTCCTCAAAAATTAAGTCGTTCGTTGTCAGCACAAGTTCCAAGAGTTTGCCTTATTGA 1293 0.3913 MSTPSPSSSSTIWILSNIKLQFFTRIKRFLQSKATRKRCDVSEQPHKVEQISTLQVADNHVQDEEMEEVEESEILLQKTVKMLHFGTWEEKEVAAKEIETLVKQDVKVRKLITELGVVPVLVSMVASTVLSRRRAGLSALIYLADGTYTNKAMIVEAGILSKLPKTIDLIDESTMNEFAELVLSLSSLANTQFPFPSLDFVPFLKDILKKDTNVDTKRSCLGALYNISTMLENASTLVSYGLVPILLELSLVKEISEKALATLGNLLVTLMGKKEIEKSSMVPQNFVEVLSWEDKPKCQELSVYILMILAHQSLDQREKMAQARIVPMLLEVVLLGSPLAQKRAMKLLQWFKNERQVKMGPHSGPQTPRFAMGSPLNQRDSKEGKNLMKNLVKQSLHKNLEIITQRANLNGESSKIKSFVVSTSSKSLPY* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4551 430 Gene3D - 44 403 IPR011989 -
Psa1g4551 430 SUPERFAMILY ARM repeat 78 350 IPR016024 -
Psa1g4551 430 SMART arm_5 147 229 IPR000225 GO:0005515
Psa1g4551 430 SMART arm_5 105 145 IPR000225 GO:0005515
Psa1g4551 430 SMART arm_5 230 268 IPR000225 GO:0005515
Psa1g4551 430 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 67 430 - -
Psa1g4551 430 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 67 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4551 Psa-Chr1 349941692 349945419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4551 89 377 U-box Gene Family AT1G67530 27.974 1.08e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4551 - - gmx:100813828 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4551 1 349941692 349945419 Psa1g4551 1 349941692 349945419 ECH