Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4548 ATGGATTCTGGCTCTGATATTTCGAGGGTACTGTTCAATACCACTTCTTATGGATTTGATGCTTTAAATGGGATTTCAAGAGGAAGATTTGTACCAACAAACTCACTGGTTTTGGATAGTGAGAAAGGAGATCTAGTGAATTCTCCTCCAAATCCAATAATTGGAGAGAAAAAGATTTGTGATGCTAACAAAACTTTGGCAGCTTTGAAGAGTCATAGGGAAGCAGAGAGGAGAAGAAGAAACAGAATTAATGGACATCTTGCAAAACTTCGAGGACTTGTGTCATGTTCTCCAAAGATGGACAAAGCACACCTACTAGCAGAGGTTGTTAGGCAAGTGAAGGACTGA 348 0.3966 MDSGSDISRVLFNTTSYGFDALNGISRGRFVPTNSLVLDSEKGDLVNSPPNPIIGEKKICDANKTLAALKSHREAERRRRNRINGHLAKLRGLVSCSPKMDKAHLLAEVVRQVKD* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4548 115 SMART finulus 73 115 IPR011598 GO:0046983
Psa1g4548 115 PANTHER DNA BINDING PROTEIN-LIKE 11 115 - -
Psa1g4548 115 Pfam Helix-loop-helix DNA-binding domain 71 111 IPR011598 GO:0046983
Psa1g4548 115 Gene3D - 63 115 IPR036638 GO:0046983
Psa1g4548 115 PANTHER TRANSCRIPTION FACTOR BHLH30 11 115 IPR045847 GO:0003700|GO:0006355
Psa1g4548 115 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 115 IPR011598 GO:0046983
Psa1g4548 115 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 114 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4548 Psa-Chr1 349886225 349888174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4548 70 115 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 63.043 3.21e-12 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa1g4548 HLH 8.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4548 - - mtr:MTR_2g015890 160.229