Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4539 ATGTCCCAACCTACTTCGCTCCGTCGTCAACAGCTTATCAGAGAGTGTCCTATTCTTTCTCACATTGAGCCTAAACAGATCAAAGTCTGGTTCCAGAATCGAAGGTGTAGAGAGAAGCAGAGAAAGAAGCTGATGGTTGCAAGCGTGGAATGGATATGGAATATTAGTACTGATGGTGTTTGTTGTTGTTTCGATCTGCAGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTATCAAGCGTACTGGAACTGCTGTTGAGTGGTCCAATGCCCGCCAACGAGCTTTCCCCTGGATAATGCTCGTAGCTCTTTGTGAGGAAGCTGTAGAGAAACTCTCAGATATGAATCATCCTGATGTGAAGTTCATTAGATGGTGGAATTGGCTTGAGAGTTCTAAACAAACAGGGTCTTCCAAATCAGATAATGCAACGGCTCGTCTAACAGGGTGTGGCTGGCGTGGTCACTCTGCTAATGTGTCTGTGGCCCAAGGCTCCCAGTCTGAAGGGATTCTACACAACACAACTATATTTGTTAGAGGGCTTGATTCTGAAATCAGCGATGAGGATCTCAGACAACCGTTTTTGCAATATGGCGATGTTGTCTCCGTGAAAATTCCAATCGGTAAAGGATGTGCTCTTGTTCAACTTGCTGACAGGTAA 666 0.4505 MSQPTSLRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKKLMVASVEWIWNISTDGVCCCFDLQTFVHCRGDFSRVSIKRTGTAVEWSNARQRAFPWIMLVALCEEAVEKLSDMNHPDVKFIRWWNWLESSKQTGSSKSDNATARLTGCGWRGHSANVSVAQGSQSEGILHNTTIFVRGLDSEISDEDLRQPFLQYGDVVSVKIPIGKGCALVQLADR* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4539 221 SUPERFAMILY Homeodomain-like 3 46 IPR009057 -
Psa1g4539 221 SUPERFAMILY RNA-binding domain, RBD 170 221 IPR035979 GO:0003676
Psa1g4539 221 CDD homeodomain 4 42 IPR001356 GO:0003677
Psa1g4539 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 220 IPR000504 GO:0003723
Psa1g4539 221 Gene3D - 2 45 - -
Psa1g4539 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 221 IPR000504 GO:0003723
Psa1g4539 221 ProSiteProfiles 'Homeobox' domain profile. 1 41 IPR001356 GO:0003677
Psa1g4539 221 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 152 221 - -
Psa1g4539 221 Gene3D - 160 221 IPR012677 -
Psa1g4539 221 Pfam Homeodomain 3 40 IPR001356 GO:0003677
Psa1g4539 221 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 152 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4539 Psa-Chr1 349592464 349596335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4539 3 43 Homeobox Transcription Factor Family AT2G34710 90.244 1.19e-19 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Psa1g4539 RRM_1 4.7e-07 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4539 - - gmx:100798089 107.071