Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4512 ATGGCAGCAACAAAAAGAAAAGCCATAGGCATCGACCTTGGTACAACCTATAGCTGCGTAGCAGTGTGGCGAAACAATCGTGTTGAGATCATTCCAAACGACCAAGGAAACCGCATCACCCCGTCTTATGTCGCCTTCACTGAAACCGAAAGGTTAATAGGCGATGCTGCGATAAACCAGTTAGCCACTAATCCGCACAACACTGTTTTTAATGCCAAACGTTTGATTGGTCGTCGATTCTCCGACCTATCGGTTCAACAAGACATAAGGCTTTGGCCTTTTAAGGTTGTCCCAAACAACAAAGACAAGCCAATGATTGTGCTCACTTACAAAGGCGAAGAGAAACGTATATCACCTCAAGAGATATCTTCCATGGTGCTGTCTAAGTTGAAGGATGATGCTGAAGCTTATTTGTGCCATGAAGTGAAAGATGCTGTTATCACTGTTCCTGCTCACTTCAACAACTCTCAGAGACAGGCTACAAAAGATGCAGGGAAAATCGCTGGTTTTAATGTGATGCGGATCATCAACGAGCCTACTGCAGCTGCTATTGCTTATGGTTTTGACAAGATACAATGGAGAGAAGGTGAGAAGAATGTGCTCGTGTTTGATCTTGGTGGTGGAACCTTTGATGTTTCCTTGGTGACCAATGATGAAGGAATGTTCAAGGTTAAGGCTACATTGGGAGATACTCATTTGGGTGGTGTTGATTTTGATAACAATTTGGTGAACCGTCTTGTTGAAATGTTTCACAGAAAGTATAAGAAGGATTTGAACATCAGTGAAAATTCCAAAGCTTTGGGGAGGTTAAGGTCAGCATGTGAGAAAGCAAAAAGACTACTTTCTTCAACTTCAATGACAACTATTGAGCTTGATTCTCTATGTGGAGGGATTGATCTACATGTCACTGTTACTAGAGCTTTGTTTGAGGAAATAAACAAAGATTTGTTCAGAAAGTGTATGGAGACCGTGGAAAAATGTTTGAGTGAGGCAAAGATTAATAAAAACCAAGTTCATGATTTTGTTCTTGTAGGAGGGTCTACTAGAATTCCAAAGATTCAACAACTATTGAAGGAAATGTTCAGAGTCAACGGCGAAATCAAAGAGCCTTGCAAAAGCATTAATCCTGATGAAGCTGTGGCTTATGGTGCAGCAGTTCAAGCAGCAATATTGAATGATGAAGGAGACAAGAAAATTGAAGATTTGTTGTTGTTGGATGTTATGCCTTTTAGTCTTGGTGTTGAGACAGGTGATGGTGCCATGTCTGTTTTGATTCCAAAGAATACAATGATCCCTACAAAGAAGGAAAGTGTTTTTTCTACACTTTCTCATAATCAAGATAGTGTTTTGATCAAAGTGTATGAAGGAGAAGGAGTTAAGACTAAGGATAACTTTTTGCTTGGGAAATTTGAGCTACTAGGATTCTCTTCAACACCTAGAAAGATTCCAAATATCAATGTTTGTTTTGATGTTGATGTGAATGGTATTTTAGAGGTTACTGCTGAAGATAAGACACAAGGGTTGAAAAAAAAGATTACTATCATCAACAAGGAGGGGAGGTTGAGTTGTGAAGAGATGGGGAGGATGGTGAGGGATGGAGAGAGGTATAAGATAGAAGATGAGGAGGCGAGGAAGAAGGTGAAGGCAAAGAACTTGTTTGAGAATTATGTTTACGAAATGAGAGAGAAAGTGAAGAAGCTTGAGAAGGCTGTGGAGGAAACTATTGATTGGTTTGATAGCAATCAATTGGCTGAAATTGATGAGTTTGAGTTCAAGAAACAGGAGTTGGAAAAGAATATGAAGCTTCTTTAA 1812 0.3974 MAATKRKAIGIDLGTTYSCVAVWRNNRVEIIPNDQGNRITPSYVAFTETERLIGDAAINQLATNPHNTVFNAKRLIGRRFSDLSVQQDIRLWPFKVVPNNKDKPMIVLTYKGEEKRISPQEISSMVLSKLKDDAEAYLCHEVKDAVITVPAHFNNSQRQATKDAGKIAGFNVMRIINEPTAAAIAYGFDKIQWREGEKNVLVFDLGGGTFDVSLVTNDEGMFKVKATLGDTHLGGVDFDNNLVNRLVEMFHRKYKKDLNISENSKALGRLRSACEKAKRLLSSTSMTTIELDSLCGGIDLHVTVTRALFEEINKDLFRKCMETVEKCLSEAKINKNQVHDFVLVGGSTRIPKIQQLLKEMFRVNGEIKEPCKSINPDEAVAYGAAVQAAILNDEGDKKIEDLLLLDVMPFSLGVETGDGAMSVLIPKNTMIPTKKESVFSTLSHNQDSVLIKVYEGEGVKTKDNFLLGKFELLGFSSTPRKIPNINVCFDVDVNGILEVTAEDKTQGLKKKITIINKEGRLSCEEMGRMVRDGERYKIEDEEARKKVKAKNLFENYVYEMREKVKKLEKAVEETIDWFDSNQLAEIDEFEFKKQELEKNMKLL* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4512 603 Gene3D - 550 602 IPR029048 -
Psa1g4512 603 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Psa1g4512 603 Pfam Hsp70 protein 8 599 IPR013126 GO:0005524|GO:0140662
Psa1g4512 603 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Psa1g4512 603 Gene3D - 70 125 - -
Psa1g4512 603 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 549 599 IPR029048 -
Psa1g4512 603 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 396 549 IPR029047 -
Psa1g4512 603 PRINTS 70kDa heat shock protein signature 7 20 - -
Psa1g4512 603 PRINTS 70kDa heat shock protein signature 35 47 - -
Psa1g4512 603 PRINTS 70kDa heat shock protein signature 57 65 - -
Psa1g4512 603 PRINTS 70kDa heat shock protein signature 145 165 - -
Psa1g4512 603 PRINTS 70kDa heat shock protein signature 208 218 - -
Psa1g4512 603 PRINTS 70kDa heat shock protein signature 374 394 - -
Psa1g4512 603 PRINTS 70kDa heat shock protein signature 401 420 - -
Psa1g4512 603 PRINTS 70kDa heat shock protein signature 482 498 - -
Psa1g4512 603 Gene3D Actin; Chain A, domain 4 234 319 - -
Psa1g4512 603 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 398 554 IPR029047 -
Psa1g4512 603 Coils Coil 586 603 - -
Psa1g4512 603 Gene3D - 9 389 - -
Psa1g4512 603 SUPERFAMILY Actin-like ATPase domain 7 189 IPR043129 -
Psa1g4512 603 PANTHER HEAT SHOCK PROTEIN 70KDA 4 598 IPR013126 GO:0005524|GO:0140662
Psa1g4512 603 Gene3D - 191 371 - -
Psa1g4512 603 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 4 598 - -
Psa1g4512 603 SUPERFAMILY Actin-like ATPase domain 197 391 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4512 Psa-Chr1 348260476 348263690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4512 1 597 Calmodulin-binding Proteins AT1G16030 67.103 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4512 K03283 - gmx:100788531 902.123