Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4504 ATGGGAATGAGATGTAACACATTTGGATTTTGGTTTAGAATTTGTATTTGCTTTATTTCTGTTTGGGGAATTAGTGAGTGTTGGTCGCTTAATGATGAAGGATTGGCTTTATTGGAGTTTCGTGGAAGAATAACTTGCGATCCTCGTGTTTCTTTGGAGAATTGGAATCCAAATGATTATGACCCTTGCAACTGGTTCGGGGTTTATTGTGTCGATAGTAAAGTGCAGACTTTGGACCTAAGTGGTCTGTCCTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTAGTCACTTAAAATCACTCGTGTTATGCAATAATAACTTTTCTGGTGACATTCCTAAAGAGCTTGGAGATTTAGCTGAGTTAGAGTTATTAGATTTAAGGGAGAATAATTTATCAGGTTGCGTTCCAGCAGAACTTAGTAACATGTTATCCCTAAAACACTTGTTGCTTTGTGATAACAATATAGAAGAAAGTGATTTTCAAGACCAAGGAAATTTCAGATTATTTTCTAAATCACTACTTGATGATTGTTCATCGCCTCTCGCGACATTATTTGCCTGCATCAATAGAAAGTTTGGTCACTGTGTGTGGCATAGCAACGTCAAGCAATGGAGCAAACCAGATTCGTTGATTATTCCGATTAAAGTAGCACTTCTGAAATGCCTCGACGCCTTTTCGCTGCCACTGTTCAAGCAAGGCCATGAAGAGAAATATTTTGAACCAGAAATTGTGATGAATGTGCCAAATTTGATCAGTTATGGGCGTCGTAGGTTACTTGAACGTTCGAGTAACCTTGCCGCTGCACCTTATAAAGGCGAACCTGCAAAAGATTTCAGTAAAACTCCAATTAGCATTAGTAGTGGATCTTTTCCAGCTGTTCCACAAGCTAAAAAGAACAAAAATCAGTCACATACACCATTGCCTGCTCCTTATTCTCTTCCAAATGATGTAATCCATTCAAGTCAACAAAACATCAAAAGAGATGAAAATGTGTGGAAGTATATACTTATTATCATAGCTATCGTCGTGATTGTCGTTCTGATCGTAGTTCTTCTTTGCATTTGGACAAAACCAGCAGCTAAAATAATTAAACCTTGGAACACAGGCATTAGTGGACAGTTGCAAAAAGCTTTTATAACAGGTGTTCCTAAGTTGAATAAAGTAGAATTAGAGACAGCATGTGAAGATTTCAGCAATATTGTTATTAGTTTTGAAACATGCACTATTTACAAAGGAACATTGTCTAGTGGAGTTGAAATTGCTGTTGTTTCTGGTCTCATTAATTCTCGAAAAGATTGGAATAAGAACATGGAATTGAACTATAGAAAAAAGATTGCGACATTGTCCCGCATTAACCATAAGAACTTTATTAATCTTATTGGATATTGTGAAGAAGAAGAACCATTTGCAAGGATGTTTGTATTCGAATACGCCCCAAATGGAAGCCTATTTGAGTACCTACATGTTAAAGACGTCGAACGTCTTGAATGGAGTGAAAGGATAAGAATTATAATGGGAACGGCTTATTGTCTTACGTACATGCACGGGTTAAATCCACCAATATCTCATACCAAAGTTGCTTCGAATTTGATCATGTTGTCGGATGATTATGCTGCAAAGCTTGCAGAGATCACTTTTAGAACTATTCTAGCACAACCTAGTTCAAGTAAAGGTGGTTCTTCAAGGAAATCTGAGATGCAACGGGAGCCTTTCGACACCAATGTCTATGATTTCGGAATATTGTTGCTAGAAATCATTTCCGGGAAATTGCCTCATTCTGAAGAACAAGGAAGTCTTGTCAACTGGGCTTCTGAGTACTTAAATGACAGAAGAAGCATAACTTATATGATTGATCCAAGTCTGAAATCATTCAAAGATAACGAACTCGACGTGATCTGCGAGGTGATTCAAGGGTGTATTCAACCTGAACCAAAGTTAAGGCCAACAATGAAAGACATAACTTCTAGATTAAGAGAAGTGGTTAATGTAACACCTGAGCAAGCTTCTCCAAGGCTTTCACCACTATGGTGGGCTGAACTTGAGATATTATCAGTGGAGGCTACTTGA 2073 0.3801 MGMRCNTFGFWFRICICFISVWGISECWSLNDEGLALLEFRGRITCDPRVSLENWNPNDYDPCNWFGVYCVDSKVQTLDLSGLSLEGTLAPELGKLSHLKSLVLCNNNFSGDIPKELGDLAELELLDLRENNLSGCVPAELSNMLSLKHLLLCDNNIEESDFQDQGNFRLFSKSLLDDCSSPLATLFACINRKFGHCVWHSNVKQWSKPDSLIIPIKVALLKCLDAFSLPLFKQGHEEKYFEPEIVMNVPNLISYGRRRLLERSSNLAAAPYKGEPAKDFSKTPISISSGSFPAVPQAKKNKNQSHTPLPAPYSLPNDVIHSSQQNIKRDENVWKYILIIIAIVVIVVLIVVLLCIWTKPAAKIIKPWNTGISGQLQKAFITGVPKLNKVELETACEDFSNIVISFETCTIYKGTLSSGVEIAVVSGLINSRKDWNKNMELNYRKKIATLSRINHKNFINLIGYCEEEEPFARMFVFEYAPNGSLFEYLHVKDVERLEWSERIRIIMGTAYCLTYMHGLNPPISHTKVASNLIMLSDDYAAKLAEITFRTILAQPSSSKGGSSRKSEMQREPFDTNVYDFGILLLEIISGKLPHSEEQGSLVNWASEYLNDRRSITYMIDPSLKSFKDNELDVICEVIQGCIQPEPKLRPTMKDITSRLREVVNVTPEQASPRLSPLWWAELEILSVEAT* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4504 690 Gene3D Phosphorylase Kinase; domain 1 374 479 - -
Psa1g4504 690 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Psa1g4504 690 ProSiteProfiles Protein kinase domain profile. 362 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4504 690 PANTHER LRR RECEPTOR-LIKE KINASE 1 690 - -
Psa1g4504 690 Pfam Leucine rich repeat 97 157 IPR001611 GO:0005515
Psa1g4504 690 Gene3D Ribonuclease Inhibitor 29 199 IPR032675 -
Psa1g4504 690 Gene3D Transferase(Phosphotransferase) domain 1 480 672 - -
Psa1g4504 690 SUPERFAMILY L domain-like 28 164 - -
Psa1g4504 690 SUPERFAMILY Protein kinase-like (PK-like) 411 668 IPR011009 -
Psa1g4504 690 PANTHER PROTEIN MALE DISCOVERER 2 1 690 - -
Psa1g4504 690 Pfam Protein tyrosine and serine/threonine kinase 411 659 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4504 Psa-Chr1 347910769 347915230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4504 96 662 Receptor kinase-like Gene Family AT1G28440 26.108 1.65e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Psa1g4504 PK_Tyr_Ser-Thr 2.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4504 - - adu:107468254 825.854