Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4489 ATGGAAGGTGTTAAAGTGTTTACTTGGCTTGTTTTCTTTATTTTTCTATGGAGTTTGGTGACATTTGTTGTTGAGGGTACTGAAAGTCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTTCTTTGATGTCCATGAAGAGTAAGATGAATGATGGGCTGAATGTTATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACCTGGAACATGGTTGCTTGTTCTTCTGAGGGTTATGTCATTTCCTTGGAAATGGCGAGTGCGGGTTTATCTGGAATAATTTCCTCAGGAATTGGAAATTTGAGCCATCTTCGAACATTGTTTTTGCAGAACAATCAGTTATCAGGTCCTATACCGGCGGAGATAGGAAACCTATCAGAGCTTCAGACTCTTGATCTTTCTGGCAACCTTCTTACTGGGAACATTCCTAGTTCTTTGGGCTCTTTGACTCATCTTAGTTACTTGCGGCTCAGCAAAAATAAGCTATCTGGACAAATCCCTCAACCTGTTGCTAATCTCACAGGACTTTCCTTCTTGGATTTGTCATTCAACAATCTCAGTGGTCCTACTCCCAAAATTTTAGCAAAAGGCTATAGTATTTCAGGAAACAACTTTCTCTGTACATCATCATCACAACTTTGTATGCGCGGTTCAAAGCCGGTAAATGATACAAGATCTTCTCCAACAGTTAACAGTCATCGCCATACACTGCTTTCGGTCGTTATTGGTATCAGTTGCACATTTGTAATTTCAGTGATGCTGCTCATCTATTGGTTGCATTGGTACAAATCACGCATCCTCTATTCGTCTTACGTGGAGCAAGATTGCGAATTCGGTATTGGTCATTTGAAGAGGTTCTCCTTCCGTGAATTGCAAGTTGCTACTGGAAATTTCACTTCGAAAAATATCGTAGGACAAGGTGGTTTTGGTGTTGTATACAAAGGATGCCTTGCAAATAAAATGTTGGTGGCAGTAAAGAGGTTGAAAGATCCCAATTATACCGGAGAAGTGCAGTTTCAAACCGAAGTTGAGATGATTGGCTTGGCCGTACATCGTAACCTCTTGCGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTCGTTTATCCATTAATGCCGAACGGAAGTGTTGCTGATCGCTTGAGAGAGAGTTTCCGCGGAAAGCCATGTTTAGATTGGAACAGGCGGACGTGCATTGCTGTTGGGGCTGCACGCGGGCTTCTGTATTTGCACGAACAATGCAATCCGAAAATAATCCACAGGGATGTGAAGGCCGCAAACATTTTGTTAGACGAAAGTTTTGAAGCCGTGGTGGGAGATTTTGGTCTTGCTAAGCTCTTGGATCAAAGGGATTCACATGTAACTACTGCAGTACGTGGCACTGTAGGACACATTGCGCCCGAGTATCTCTCAACTGGTCAGTCTTCTGAAAAAACAGATGTTTTCGGATTCGGTATATTACTTTTGGAGCTCATTACAGGACAAAAAGCACTCGATGCTGGTAATGTTCCGGTCCAGAAGGGAATGATTCTTGATTGGGCTAGAACTTTATTCGAGGAGAAGCGTCTGGAAGTGTTAGTTGATAGAGATCTAAAGGGATGCTATGATCCGGTAGAGTTAGAAAAAGCGGTCGAGTTATCATTGCAATGTACTCAATCTGTTCCAAGTTTGAGACCGAAAATGTCAGAAGTTTTGAAGATTCTTGAAGGGCTAATTGGGTTGTCATTGAGACCAGAAGAGTCACAACAAGGAGGGGGTAACATATATGATGAAAGAACTTGCAGCTTCTCTCATAATTATAGTGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCCATTGAACTTTCTGGACCTAGGTGA 1872 0.4188 MEGVKVFTWLVFFIFLWSLVTFVVEGTESLLSPKGVNYEVASLMSMKSKMNDGLNVMDGWDINSVDPCTWNMVACSSEGYVISLEMASAGLSGIISSGIGNLSHLRTLFLQNNQLSGPIPAEIGNLSELQTLDLSGNLLTGNIPSSLGSLTHLSYLRLSKNKLSGQIPQPVANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNFLCTSSSQLCMRGSKPVNDTRSSPTVNSHRHTLLSVVIGISCTFVISVMLLIYWLHWYKSRILYSSYVEQDCEFGIGHLKRFSFRELQVATGNFTSKNIVGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPLMPNGSVADRLRESFRGKPCLDWNRRTCIAVGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNVPVQKGMILDWARTLFEEKRLEVLVDRDLKGCYDPVELEKAVELSLQCTQSVPSLRPKMSEVLKILEGLIGLSLRPEESQQGGGNIYDERTCSFSHNYSDVHEEPSFIIEAIELSGPR* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4489 623 SUPERFAMILY L domain-like 39 209 - -
Psa1g4489 623 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515
Psa1g4489 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 623 - -
Psa1g4489 623 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Psa1g4489 623 Pfam Protein kinase domain 300 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4489 623 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 623 - -
Psa1g4489 623 SMART serkin_6 299 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4489 623 Gene3D Ribonuclease Inhibitor 36 216 IPR032675 -
Psa1g4489 623 SMART LRR_typ_2 126 150 IPR003591 -
Psa1g4489 623 SMART LRR_typ_2 174 197 IPR003591 -
Psa1g4489 623 SMART LRR_typ_2 102 125 IPR003591 -
Psa1g4489 623 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Psa1g4489 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Psa1g4489 623 SUPERFAMILY Protein kinase-like (PK-like) 282 572 IPR011009 -
Psa1g4489 623 ProSiteProfiles Protein kinase domain profile. 299 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4489 623 Gene3D Phosphorylase Kinase; domain 1 269 373 - -
Psa1g4489 623 Gene3D Transferase(Phosphotransferase) domain 1 375 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4489 Psa-Chr1 347517032 347520124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4489 44 623 Receptor kinase-like Gene Family AT5G45780 70.619 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Psa1g4489 Pkinase 6.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4489 - - gmx:100810610 1055.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4489 1 347517032 347520124 Psa1g4489 1 347517032 347520124 ECH