Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4484 ATGGGTTTAGATGAGAGCAGAGGTAGTGTTGGGGTATTGGATTCGGTTCATGAAGTGATTGCAATTGATGGGGAAATTGGAACTTCAAGAGAAGTGGGTATGAATTCAGGATCCAGTAACGAGGAGGCTGAGGAAGTTAAGGTTCAGGAAAAGTATGATGAAGAAAATATTCGTGACGAATTGCCAGTTGCTGATCAAGAAACTAGTTATGATTCAAGCAATTCGGTTAATCAGGAAGTGGTTGAGACAGTTGTTGTTGTAATAGAGTCTGTTCATGTTCAGACTGAGTATGTTAATGGAGAGGATAGGAAATTGGAAGCAAACCCTGATGAATCAGGGCTTAGTTTGGTTTCCATGAAATCGCCAAAAGGGGAGTCTGAAATCGATAAAGATTCTTGTGTGATTGATATGAAGTGCAGTAGCCACAAAGGGTTTTCTGAGAACTCACAAGGTGAAAGGATTTGTAGGATTTGTCATCTGGCTTTTGGGCCAGCATCAGACGCAGCAATTGTCGAAAATGCTAGTGCTACAAGTGGAGATTTTATTCAACTTGGTTGCGCGTGTAAAGACGAGCTCGGCATTGCACATGTTTATTGTGCTGAAGTGTGGTTCAAGCTCAAGGGAAACAGATTATGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCGAGTGTTACTAACAACGGACCTATGGAAGAGTGGAATGATAGAAGATTCATGGACAACGGAGGTAACTCATCCCGCAGATTTGGTGGATGCTGGCGAGCACAGCCGTTTTGTAATTTCTTGATGGCGTGCCTGGTAATAGCTTTCATTATGCCATGGTTTTTTCATGTAAACATGTTCTAG 849 0.417 MGLDESRGSVGVLDSVHEVIAIDGEIGTSREVGMNSGSSNEEAEEVKVQEKYDEENIRDELPVADQETSYDSSNSVNQEVVETVVVVIESVHVQTEYVNGEDRKLEANPDESGLSLVSMKSPKGESEIDKDSCVIDMKCSSHKGFSENSQGERICRICHLAFGPASDAAIVENASATSGDFIQLGCACKDELGIAHVYCAEVWFKLKGNRLCEICGETAKNVSSVTNNGPMEEWNDRRFMDNGGNSSRRFGGCWRAQPFCNFLMACLVIAFIMPWFFHVNMF* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4484 282 Pfam RING-variant domain 155 215 IPR011016 GO:0008270
Psa1g4484 282 SUPERFAMILY RING/U-box 150 218 - -
Psa1g4484 282 SMART ringv_2 154 216 IPR011016 GO:0008270
Psa1g4484 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 227 IPR013083 -
Psa1g4484 282 ProSiteProfiles Zinc finger RING-CH-type profile. 147 222 IPR011016 GO:0008270
Psa1g4484 282 MobiDBLite consensus disorder prediction 27 58 - -
Psa1g4484 282 MobiDBLite consensus disorder prediction 43 58 - -
Psa1g4484 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 46 282 - -
Psa1g4484 282 PANTHER ZINC FINGER, RING-CH-TYPE 46 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4484 Psa-Chr1 347326262 347327330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4484 135 281 C3H Transcription Factor Family AT5G05830 39.474 1.27e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4484 - - gmx:100776373 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4484 1 347326262 347327330 Psa1g4484 1 347326262 347327330 ECH