Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4483 ATGGCCAAACTATGCTCTCTTCTCTTTCTTCTCTCACTCTCACTAAATTATTACTCCTTCACTTGTTTATCTATGAGTAGAAAGAACATGACCACAGATGAATCTTCACTTCTTGCATTCAAATCCTCCATTACTTTATACCCTTCTCTTATGTTCAATACTTGGTCAACCTCATCTTCGTTATGCACTTGGGTTGGTGTTACATGTGATGAACAACAACATGGTAGAGTCATTGCTTTGGATCTTAATAACATGGGACTTAAAGGTGTTATTTCCCCACAACTTGGGAATCTCTCGTTCCTTGTTTACCTTAATCTTCAAGGAAATGGTTTCACTGGTGAGTTGCCACAATCTTTATTTCGGGTGCATCGATTGGAGTTTCTTGATTTGAGCTGCAATGAGTTTGTTGGAGGAATTCCAATAGAGGTTGGGGACTTGTCAAAACTTCAATATATGAATCTTGGTAGTAACAAACTTTCTGGAACCATACCTCAAACCATTTCCAAGTTGTCTTCACTTGTAGAAATTCATTTAGATAATAACTCACTCTCAGGAGAAATTCCAAAAGAGATGGGTGATCTTACACAACTAATGACAATGGACCTTAAATATAATCAGCTTTCTGGCAAAATACCATCAATAATCTTCAACAACTCACTGCTGCAATATTTTATTCTTGCTCATAATAATCTATCCGGCAATCTTCCATCAAATATTTGCAAAGGACTTCCAAATCTTGCAACACTTTATATTTCTTATAACAAATTTTCTGGTGACATGCCAACTGTTTGGCATCAATGTGCAAATTTGGAAGTCTTATCATTATCCTTCAATGGTTTCAACAAAGGACCTATTCCAGAAGACATGGGAAACTTGAGCAAGCTTCATTATTTAGATCTTAGTAAAAACAACTTGGACGGTTCAATACCCGAGCAGATTGGAAATCTTGATCAACTCGATACCCTACTATTAACCAACAATAGCTTGAGAGGACCTATTGCATTAAAACTCTTCAACATTTCATCATTGAGAATCTTGTATCTTGCAAACAATTTTCTCTCGGGCATTCTTCCATCAGACATAGGACGTGGCTTGCCTAAATTGGAAAAATTACAATTAGGTGTAAACATGTTTGGAGGAAACATTCCAATTGGCATAGCCAACGCTTCTAAGCTCACTGAAATAGACTTTATGAGAAATGAATTCAGTGGAATAATACCTAATGTCTTTGGTGGTTTAAAACTCCTTGAATGTCTCCATTTATATTCCAATCCTAATTTGAAACTAGATGATTCCTTTGGATTCAACTTCCTCACTTCACTCACAGATTGTAGACATTTGAAATATTTGTCTATTTCACATACTAGATTATCCAAACTTCCAAAGTCAATTGGAAACTTAACTGTACAATATTTCTGGGCAGATTCTTCCGGAATTAGTGGTAATTTTCCCTTGGAGATCGGAAACATGAGCAACCTGATTCGATTAACTCTGACAAAGAATGATTTAAATGGACCAATTCCGCGTACGATTAGAGGGTTACAGAACCTTCAGTCTTTGAATCTTGGCTACAACGGACTTCAAGGATCCATTGGTGACGAGCTTTGTGAAATTAGAGGTTTGAGTGACTTATATCTATCAAACAATAAGCTTTCAGGAGAGTTGCCAACATGCTTGGGAAATATGACTTCTCTTAGAAACATTGATATGTCATCTAATAGCTTGATCTCCAAGATACCTTCCTCTTTTTGGAGTCTCAGAGATCTCTTAGTGGTAGATTTATCCTCCAATGCTTTCGGTGGAAATCTTCCACCAGAGATTAGTAAATGGAGAGCAATTACACTATTAGATTTGTCTGATAATCAAATTTCAAGCAACATTCCTGAAACCATAGGTTTAATACAGACTTTGCAGACTCTCTATTTAGCAAATAACAAATTGTATGGGACAATTCCCACATCACTTGGTGAAATGTTTAGTTTGAGATTCTTGGACTTGTCCCAAAATCTTCTTACTGGTGTGATTCCAAAATCTTTAGAGTCACTTTCCCTTCTTAAAAGTATCAACTTTTCATACAATATGTTACAGGGAGAGATTCCTGATGGCGGACCGTTCAAAAATTTCACAGCTCAATCTTTCATGCATAATGAAGCGCTTTGCGGTAATCCTCTCCTACAAGTACCTTCATGTGATAAACATGTTCGGAGAAGGTCAATCGCAAAGATGCTATTGATCAAATGCATGTTGCCTATAATTGTGTCAGTCATTTTAGTTGTTGGATGCGTTGTACTTGTACTGCATAAAAGGAAAAAAGTTGAAAATCGGATTGGAAAAGATTTATCGACTATAGGAGCTCAAAGAAGGTTTTCCTATTATGAACTAGTGCGAGCAACTGATGGATTTAGTGAGAGTAACTTACTTGGAAAAGGAAGCTTTGGATCTGTGTATCAAGGGACGCTTTCTAGTGGGGAGCTAGTTGCAGTTAAAGTAATTGATTTAAACTTTGAAGCAACATCAAGGAGCTTTGATGTAGAATGCAATGCAATGCGCAACCTACGACATCGAAATCTTGTTGAGATTATTAGTAGTTGTTCAAATGCTAATTTCAAATCCTTGGTGATGAAGTTTATGTCAAATGGAAGTGTTGAAAAATGGTTATACTCGTATAACTATTGTTTAGATTTCTTGCAAAGGTTGAACATAATGATAGATGTTGCATCTGCGTTGGAGTATCTTCATCACGGTTCTTCAATACCAGTGGTTCATTGTGATCTGAAACCTAGTAATGTTTTACTAGACAGACACATGGTTGCACATGTTAGCGACTTCGGCATTGCGAAGCTCTTGGATGATGGTCAATCCGAAATTCATACAGAGACTGTAGCTACTCTTGGCTATGTTGCACCAGAGTATGGTTCTAAGGGTGTTGTTTCTGTTAAAGGAGATGTATACAGTTTTGGAATTATGCTTATGGAGATGTTCACAAGAAAGAAACCAACAGATGAAATGTTTGCAGCAGAATTAACTTTGAAAACATGGATCAGTGGATCATTGCCAAATTCAGTTATGGAAGTTGTGGATTCCAATTTACTCCAACAACATGAAAAAACAATTCATGACATTGTCTTTCATATATCGTCTATTTTCGCTTTAAGCTTGAGCTGTTGCGCGGATTCACCCGAGGAGCGAAACAACATGACAGATATCACTGCTTCATTGATCAAAATCAGGACCTTATTCCTCCAAGAAAAAGGAAATGAAAAAATGTGA 3270 0.3679 MAKLCSLLFLLSLSLNYYSFTCLSMSRKNMTTDESSLLAFKSSITLYPSLMFNTWSTSSSLCTWVGVTCDEQQHGRVIALDLNNMGLKGVISPQLGNLSFLVYLNLQGNGFTGELPQSLFRVHRLEFLDLSCNEFVGGIPIEVGDLSKLQYMNLGSNKLSGTIPQTISKLSSLVEIHLDNNSLSGEIPKEMGDLTQLMTMDLKYNQLSGKIPSIIFNNSLLQYFILAHNNLSGNLPSNICKGLPNLATLYISYNKFSGDMPTVWHQCANLEVLSLSFNGFNKGPIPEDMGNLSKLHYLDLSKNNLDGSIPEQIGNLDQLDTLLLTNNSLRGPIALKLFNISSLRILYLANNFLSGILPSDIGRGLPKLEKLQLGVNMFGGNIPIGIANASKLTEIDFMRNEFSGIIPNVFGGLKLLECLHLYSNPNLKLDDSFGFNFLTSLTDCRHLKYLSISHTRLSKLPKSIGNLTVQYFWADSSGISGNFPLEIGNMSNLIRLTLTKNDLNGPIPRTIRGLQNLQSLNLGYNGLQGSIGDELCEIRGLSDLYLSNNKLSGELPTCLGNMTSLRNIDMSSNSLISKIPSSFWSLRDLLVVDLSSNAFGGNLPPEISKWRAITLLDLSDNQISSNIPETIGLIQTLQTLYLANNKLYGTIPTSLGEMFSLRFLDLSQNLLTGVIPKSLESLSLLKSINFSYNMLQGEIPDGGPFKNFTAQSFMHNEALCGNPLLQVPSCDKHVRRRSIAKMLLIKCMLPIIVSVILVVGCVVLVLHKRKKVENRIGKDLSTIGAQRRFSYYELVRATDGFSESNLLGKGSFGSVYQGTLSSGELVAVKVIDLNFEATSRSFDVECNAMRNLRHRNLVEIISSCSNANFKSLVMKFMSNGSVEKWLYSYNYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDRHMVAHVSDFGIAKLLDDGQSEIHTETVATLGYVAPEYGSKGVVSVKGDVYSFGIMLMEMFTRKKPTDEMFAAELTLKTWISGSLPNSVMEVVDSNLLQQHEKTIHDIVFHISSIFALSLSCCADSPEERNNMTDITASLIKIRTLFLQEKGNEKM* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4483 1089 SUPERFAMILY RNI-like 298 701 - -
Psa1g4483 1089 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 268 1082 - -
Psa1g4483 1089 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 7 146 - -
Psa1g4483 1089 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 145 281 - -
Psa1g4483 1089 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 7 146 - -
Psa1g4483 1089 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 145 281 - -
Psa1g4483 1089 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 268 1082 - -
Psa1g4483 1089 Pfam Leucine Rich Repeat 342 361 IPR001611 GO:0005515
Psa1g4483 1089 Pfam Leucine Rich Repeat 564 586 IPR001611 GO:0005515
Psa1g4483 1089 Gene3D Transferase(Phosphotransferase) domain 1 877 1087 - -
Psa1g4483 1089 ProSitePatterns Protein kinases ATP-binding region signature. 807 829 IPR017441 GO:0005524
Psa1g4483 1089 SMART LRR_typ_2 444 467 IPR003591 -
Psa1g4483 1089 SMART LRR_typ_2 243 266 IPR003591 -
Psa1g4483 1089 SMART LRR_typ_2 514 538 IPR003591 -
Psa1g4483 1089 SMART LRR_typ_2 562 585 IPR003591 -
Psa1g4483 1089 SMART LRR_typ_2 658 681 IPR003591 -
Psa1g4483 1089 SMART LRR_typ_2 292 316 IPR003591 -
Psa1g4483 1089 SMART LRR_typ_2 98 122 IPR003591 -
Psa1g4483 1089 SMART LRR_typ_2 586 610 IPR003591 -
Psa1g4483 1089 SMART LRR_typ_2 340 364 IPR003591 -
Psa1g4483 1089 SMART LRR_typ_2 194 218 IPR003591 -
Psa1g4483 1089 SMART LRR_typ_2 146 170 IPR003591 -
Psa1g4483 1089 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Psa1g4483 1089 SUPERFAMILY RNI-like 80 425 - -
Psa1g4483 1089 SMART serkin_6 801 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4483 1089 SUPERFAMILY Protein kinase-like (PK-like) 782 1073 IPR011009 -
Psa1g4483 1089 Gene3D Ribonuclease Inhibitor 202 428 IPR032675 -
Psa1g4483 1089 Gene3D Ribonuclease Inhibitor 429 737 IPR032675 -
Psa1g4483 1089 ProSiteProfiles Protein kinase domain profile. 801 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4483 1089 Pfam Protein kinase domain 802 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4483 1089 Gene3D Ribonuclease Inhibitor 30 191 IPR032675 -
Psa1g4483 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 920 932 IPR008271 GO:0004672|GO:0006468
Psa1g4483 1089 Gene3D Phosphorylase Kinase; domain 1 772 876 - -
Psa1g4483 1089 Pfam Leucine rich repeat 636 695 IPR001611 GO:0005515
Psa1g4483 1089 Pfam Leucine rich repeat 221 279 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4483 Psa-Chr1 347320087 347325960 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4483 557 700 Receptor kinase-like Gene Family AT3G47570 32.639 4.30e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Psa1g4483 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4483 - K13420 mtr:MTR_8g465340 1181.78