Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4480 ATGGCCAAACTATACTCTAATTGGCTCTGTATTCTCTCTGTCTCACTCTATTATTACTTCTTCACTTGCTTAGCTATGAGTACTAAAAAAAACATCACCACCGATGAATTTGCACTTCTTTCATTCAAATCATCTATTACTTTGGACCCTTATCATATGCTTAGTAATTGGTCAATTTCCTCTAATTCTTCTACTTTCTCTTCATGCAATTGGGTTGGTGTTACTTGTGATGAACATCATGGAAGAGTAAATGCATTGAATCTTAGTAACATGGCCCTTCAAGGTACCATTTCTCCTCAATTGGGAAATCTCTCTTTCCTTCTTGTTCTTGATCTACAAGGCAATAGTTTCCATGGTGAGTTACCACATGAGTTACTTCATTTGAAGAGATTGAAGTGGTTTGATTTGAGTTACAATGATTTTGTTGGAGAAATTCCTTTAAAGATAGGGGACTTATCAAAACTTCAATATTTGGATTTTGGATATAATAATATTGTTGGAGTTATTCCTCAATCTATATCCAATTTGTCAATGTTGGAGTATCTAAGTTGGAAATCAAATTTCCTTGAAGGAACTATTCCACATGTTGTTGGTAAACTTCATAGGTTGAGAATTTTGGATGTTAGAAATAACAAACTCTCTGGAATCATACCATCAAATATTTTCAACATGTCTTTACTTCAAGAAATCCGTCTATCAAATAACTCTTTATCAGGAGAAATTCCAAAAGGAATTGGTGATCTTCCACAGCTGATAACATTGAACCTTCAATATAATCTCCTCACTGGCAACATATTAATGTTGAACAACTCATCTTTGCAAATATTGGGTCTTGGTTTCAATAATCTCTCTGGAATTCTTCCATCAAATGTTTGTCAAGGACTTCCAATAGAATCTAATGAGATAGAAATACTTAATGATTTTTCTGGTAAGATGCCGAATGTATGGCGATATTGCAAAGAATTGGTAGATTTGGAGCTATCTTTCAATAATTTTGACAAAGGACCTATGCCAGCAGACATTGGAAACTTGACAAACCTTCAATCTTTGTATCTTACTAGCACCAACTTGGAGGGTGAAATTCCAGTCTCCCTCTTCAACATCTCTTCTTTGAAAGAGATCAATCTTGACGTAAACGATTTAAATGGAACTCTCCCAGATGAGATGTGTCATCAACTTCCTCAACTTGAAAAATTTACTCTATTCGGTAATCATTTGGAAGGAACCATTCCACGATCGATTGGCAATTGCACATTGTTACAAATTTTATCTTTACATGATAACTTTTTTTCAGGTTCGATACCAATGGAGATTGGCAATCTCAATGAACTTAAGTATCTTCAAGTAGGAAATAACAGATTGAGTGGATCTATTTCTTCAAAAGTCTTCAACATCTCAACATTGGAATATTTTCGTCTTGAAGAAAATTCTCTCTCAGGCATGCTTCCATCAAATATGGGATTAGGCCTTCCAAGCCTAATACAACTACATATGTATAGAAATAAGTTTGTTGGAAATATTCCAAATAGTATATCTAATGCTTCAAATCTCGTCATAATTGACTTGAGTTCGAATGGATTTAGTGGAATTATACCCAATTCATTTGGAAATTTAGGAGACCTTAAATCACTAATCATTGGTGGAAATAATTTGACAATAGATGAATCTCTTGAATTTAACTTCCTAACTTCACTAACAAGTTGCAGATATTTGAAACTTGTTGAAATTTCAGAGAATAGCTTACCATTAAAACTTCCCAAGTCCATTGGAAACTTATCTGTAGAACATTTTTGGGCAAATTCTTGTGGAATTAAAGGAAACATTCCCCTAGAAATCGGAAACATGAGCAACTTGGTTCGATTATCTCTGAGTAAGAATGATTTAAATGGACAAATCCCTAGTACAATTAAAGAGTTGCAAAAACTTCAATCATTAGGTCTTGACTACAATGGACTTGAAGGATCTATAATTGATGAGGTTTGTGAAATTAGGAGTTTGAGTGAGTTGAATTTAACAAGCAACGAGTTTTTTGGAGTGTTACCAACATGTTTAGGAAATATGACTTCTCTTAGGAAGTTTCACATTGGATCTAACAGGTTAACCTCTACAATACCGTCCTCCTTTTGGAATCTCAAAGATATTTTAGAGGTAAGCTTATCCCTTAATGCTATAACTGGAAATCTTCCATCTGAGATTAAGAATTTGAGAGCTCTTGTGCTATTAGACCTGTCAGGAAATCAAATTTCAAACAACATTCCAACAACCATAAGTCTTTTGACAACTTTAGAAACTCTCTCCTTATCAAACAACAAATTGGAGGGACATATCCCAACATCACTTGGTGAAATGGTAAGTTTGAGCTTCTTGGACTTGTCTCAAAATCTTATTACCGGTGTGATCCCAAAATCTTTAGAGTCACTTTCTTATCTTAAACACCTTAATCTGTCATACAATAGATTGCAAGGAGAGATTCCAAATGGAGGACCTTTCAAAAGCTTTGCAGCTCAATCTTTCATTCATAATAAAGCACTTTGTGGCAATCCTTTCTTACAAGTACCTCCATGTAATAAAAATGGGAAAAATAAGTTATTAATCATATGCAGTTCATCCATAATTGTTGTCTTGTGCTGTTTGGTTCTTGTATGCATAATAATTCTAATGCTTAAAAGGAAATTGGTTAAAAATCCAATCGAAAAGGATTTATCAACTTTAGGGGCTCCAGGCAGGATTTCCTATTATGAACTTGTGAAAGCAACGAATGGATTCAATGAGAGTAATTTACTTGGAAAAGGGGGCTTTGGATCTGTGTATCAAGGAAATCTTTCTAGTGGAAAGATGGTAGCAGTTAAAGTACTTGACTTAAACTTGGAAGCAACATCAAGAAGCTTTGATGCAGAATGCAATGCCATGCGCAACCTTCGACATCGAAATCTCGTTCAAGTTATCACTAGTTGTTCAAATGTTGATTTCAAATCTATAGTGATGGAGTTTACGACAAATGGAAGTTTGGAAAAATGGTTATACTCAGATAACTATTTTTTGGATTTCTTGCAAAGGTTGAATATAATGATAGATGTTGCGTCTGCATTAGAGTATCTCCATCATGGTTCTTCAATACCAGTGGTTCATTGTGATTTGAAGCCTAGTAATGTGTTACTGGATGAAGATATGGTTGCACATGTAAGTGATTTTGGCATTTCCAAGCTATTGGATGAAGGACATTCTAAAACTCACACCGAAACTTTGGCTACTCTTGGCTATGTTGCACCAGAATATGGATCTAAGGGAGTCATTTCAGTTAAAGGTGATGTGTATAGCTATGGGATAATGCTGATGGAAATTTTCACAGGAAAGAAGCCAACAAATGAAATGTTTTCAGACAAATTAACTTTGAAAAGCTGGATTAGTGAGTCAATGCTGAGTTCAATTATGGAAGTTGTGGATTACAATTTAGTCTCACAACATGAGAAAGAAATGTATGAAATTTTAGCTTTAGCATTGAGATGCTGTGAAGATTCACCAGAGGAACGAATTAATATAAAAGATGTATCCTCATTATTACTCAAAATTAAGACCTCATTCATCCAATGA 3591 0.3445 MAKLYSNWLCILSVSLYYYFFTCLAMSTKKNITTDEFALLSFKSSITLDPYHMLSNWSISSNSSTFSSCNWVGVTCDEHHGRVNALNLSNMALQGTISPQLGNLSFLLVLDLQGNSFHGELPHELLHLKRLKWFDLSYNDFVGEIPLKIGDLSKLQYLDFGYNNIVGVIPQSISNLSMLEYLSWKSNFLEGTIPHVVGKLHRLRILDVRNNKLSGIIPSNIFNMSLLQEIRLSNNSLSGEIPKGIGDLPQLITLNLQYNLLTGNILMLNNSSLQILGLGFNNLSGILPSNVCQGLPIESNEIEILNDFSGKMPNVWRYCKELVDLELSFNNFDKGPMPADIGNLTNLQSLYLTSTNLEGEIPVSLFNISSLKEINLDVNDLNGTLPDEMCHQLPQLEKFTLFGNHLEGTIPRSIGNCTLLQILSLHDNFFSGSIPMEIGNLNELKYLQVGNNRLSGSISSKVFNISTLEYFRLEENSLSGMLPSNMGLGLPSLIQLHMYRNKFVGNIPNSISNASNLVIIDLSSNGFSGIIPNSFGNLGDLKSLIIGGNNLTIDESLEFNFLTSLTSCRYLKLVEISENSLPLKLPKSIGNLSVEHFWANSCGIKGNIPLEIGNMSNLVRLSLSKNDLNGQIPSTIKELQKLQSLGLDYNGLEGSIIDEVCEIRSLSELNLTSNEFFGVLPTCLGNMTSLRKFHIGSNRLTSTIPSSFWNLKDILEVSLSLNAITGNLPSEIKNLRALVLLDLSGNQISNNIPTTISLLTTLETLSLSNNKLEGHIPTSLGEMVSLSFLDLSQNLITGVIPKSLESLSYLKHLNLSYNRLQGEIPNGGPFKSFAAQSFIHNKALCGNPFLQVPPCNKNGKNKLLIICSSSIIVVLCCLVLVCIIILMLKRKLVKNPIEKDLSTLGAPGRISYYELVKATNGFNESNLLGKGGFGSVYQGNLSSGKMVAVKVLDLNLEATSRSFDAECNAMRNLRHRNLVQVITSCSNVDFKSIVMEFTTNGSLEKWLYSDNYFLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDEDMVAHVSDFGISKLLDEGHSKTHTETLATLGYVAPEYGSKGVISVKGDVYSYGIMLMEIFTGKKPTNEMFSDKLTLKSWISESMLSSIMEVVDYNLVSQHEKEMYEILALALRCCEDSPEERINIKDVSSLLLKIKTSFIQ* 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4480 1196 Gene3D Phosphorylase Kinase; domain 1 906 997 - -
Psa1g4480 1196 Pfam Protein kinase domain 923 1183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4480 1196 PANTHER - 353 1194 - -
Psa1g4480 1196 PANTHER - 10 206 - -
Psa1g4480 1196 PANTHER - 200 362 - -
Psa1g4480 1196 PANTHER - 306 459 - -
Psa1g4480 1196 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 306 459 - -
Psa1g4480 1196 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 353 1194 - -
Psa1g4480 1196 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 10 206 - -
Psa1g4480 1196 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 200 362 - -
Psa1g4480 1196 SUPERFAMILY L domain-like 309 582 - -
Psa1g4480 1196 Gene3D Transferase(Phosphotransferase) domain 1 998 1194 - -
Psa1g4480 1196 SUPERFAMILY L domain-like 34 292 - -
Psa1g4480 1196 Gene3D Ribonuclease Inhibitor 31 188 IPR032675 -
Psa1g4480 1196 Pfam Leucine Rich Repeat 516 538 IPR001611 GO:0005515
Psa1g4480 1196 ProSitePatterns Protein kinases ATP-binding region signature. 928 950 IPR017441 GO:0005524
Psa1g4480 1196 Gene3D Ribonuclease Inhibitor 305 556 IPR032675 -
Psa1g4480 1196 Gene3D Ribonuclease Inhibitor 557 863 IPR032675 -
Psa1g4480 1196 ProSiteProfiles Protein kinase domain profile. 922 1195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4480 1196 SUPERFAMILY RNI-like 489 826 - -
Psa1g4480 1196 SUPERFAMILY Protein kinase-like (PK-like) 904 1187 IPR011009 -
Psa1g4480 1196 SMART serkin_6 922 1194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4480 1196 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Psa1g4480 1196 SMART LRR_typ_2 783 806 IPR003591 -
Psa1g4480 1196 SMART LRR_typ_2 490 514 IPR003591 -
Psa1g4480 1196 SMART LRR_typ_2 735 759 IPR003591 -
Psa1g4480 1196 SMART LRR_typ_2 615 639 IPR003591 -
Psa1g4480 1196 SMART LRR_typ_2 687 710 IPR003591 -
Psa1g4480 1196 SMART LRR_typ_2 515 537 IPR003591 -
Psa1g4480 1196 SMART LRR_typ_2 663 686 IPR003591 -
Psa1g4480 1196 SMART LRR_typ_2 393 417 IPR003591 -
Psa1g4480 1196 SMART LRR_typ_2 344 368 IPR003591 -
Psa1g4480 1196 SMART LRR_typ_2 104 128 IPR003591 -
Psa1g4480 1196 SMART LRR_typ_2 441 465 IPR003591 -
Psa1g4480 1196 SMART LRR_typ_2 807 831 IPR003591 -
Psa1g4480 1196 SMART LRR_typ_2 152 176 IPR003591 -
Psa1g4480 1196 SMART LRR_typ_2 271 294 IPR003591 -
Psa1g4480 1196 SMART LRR_typ_2 200 224 IPR003591 -
Psa1g4480 1196 SMART LRR_sd22_2 615 641 - -
Psa1g4480 1196 SMART LRR_sd22_2 200 226 - -
Psa1g4480 1196 SMART LRR_sd22_2 538 559 - -
Psa1g4480 1196 SMART LRR_sd22_2 735 754 - -
Psa1g4480 1196 SMART LRR_sd22_2 152 178 - -
Psa1g4480 1196 SMART LRR_sd22_2 441 467 - -
Psa1g4480 1196 SMART LRR_sd22_2 783 809 - -
Psa1g4480 1196 SMART LRR_sd22_2 759 774 - -
Psa1g4480 1196 Pfam Leucine rich repeat 689 748 IPR001611 GO:0005515
Psa1g4480 1196 Pfam Leucine rich repeat 761 820 IPR001611 GO:0005515
Psa1g4480 1196 Pfam Leucine rich repeat 202 261 IPR001611 GO:0005515
Psa1g4480 1196 Gene3D Ribonuclease Inhibitor 189 302 IPR032675 -
Psa1g4480 1196 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1041 1053 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4480 Psa-Chr1 347228397 347232654 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4480 591 828 Receptor kinase-like Gene Family AT3G47570 32.083 2.20e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Psa1g4480 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4480 K13420 - gmx:100784397 1212.59