Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4476 ATGTCTAAACCATACTCGAATTGGCTCTGTATTCTCTCTGCCTCACTCTACTATTTCTTCTTCACCTGCTTAGTTATGAGTACTAAAAAAAGCATCACCACCGATGAATTTGCACTTCTTGGATTCAAATCCTCTATCACCTTAGACCCTTATCATATGCTAAGTAATTGGTCAATTCCCTCTAAATCTTCTTTTTTATCCTCTTGCAAATGGGTTGGTGTTACTTGTGATGAACATCATGGAAGAGTAAAAGCATTGAATCTTAGTAACATGGGCCTTCAAGGCACCATTTCACCTCAATTGGGAAATCTCTCTTTTCTTGTTGTTCTTGACTTACAAGGCAATAGTTTCCATGGAACCATTCCACATGTTATTGGTCAACTTCGTAGGTTACGGATTTTGAATATTCGAGATAACGTGAAGCTGTCTGGAAACATACCAACAACAATTTCAAATATGTCTTCACTTCAAGAACTCCATTTATCAAATAACTCATTAACAGGAGAAATTCCGAAAGGAATCGTCGATCTTACACAATTGAAAACAGTGAACCTTGAATATAATATCCTCACAGGCAACATATTATTTATGTTCGACAACTCATCATCGTTGCAAAATTTGAATCTTGGTTTCAATAATCTGTCTGGAATTCTTCCATCAAATGTTTGTCAAGGACTTCCAAATCTTAAATTACTCTATCTTTTTGCTAATGAGTTTTCTGGAAAGGTGCCAAAGGTTTGGCGTTATTGCAAAGAGTTGGAAGATTTAGAGTTATCATTCAATAATTTTGATAAAGAACCTTTGTCAGCTGACATTGGAAACTTGACCAAGCTTCAATATTTATATCTTTCTAATAACAACTTGGAGGGTGCAATTCCACAATCTCTCTTCAACATTTCTTCTTTACTTGAGATCAACTTTGACATAAACAATTTAAATGGAAGTCTCCCTCAGGCTATGTGTCATCATCTTCCTCAACTTGAAATATTGACTTTACGTGCTAACTATTTGGAAGGATTCATTCCTCGATCAATTGGCAATTGTTCAACATTACAAAGATTAACTTTGCAAGATAACTTTTTTACCGGTTCAATACCGATGGAGATTGGTCATCTCAATCAACTTCAGTTTCTACAATTTGGAAATAACAGCTTGACTGGATCTATTCCTTTGAGTGTCCTCAACATTTCAACATTGGTTAGTTTTCTTCTTCACCTAAATTCTCTCTCCGGAAATCTTCCATCCAATATGGGATTTGGCCTTTCAAACCTACTACAACTACACTTGTATGGAAACAAGTTTGTTGGAAAAATTCCAAATAGTATATGCAATGCTTCTAGTATGTATCAACTTGACTTGAGTGAAAATGAATTTAGTGGAATTGTACCTAGTTCTTTGGGAGATTTAACATTCCTTGAATCACTCTTCTTAGCTGGGAATAATTTGACATTCATAGATGATTCTCATGAATTCAACTTCCTTACTTCACTTACAAGTTGTAGATACTTGAAATACCTTGATATATCACAGAATAGTTTACTGTCAAACCTTCCCAAGTCCATTGGAAACTTATCTGTAGAAAACTTTTCGGCGAATTCTTGTGGAATTAATGGAAATATTCCACTAGAAATCGGAAACATCAGCAATTTGATTCGATTATCTCTAAGTAGTAATGATTTAAATGGACCAATCCCTATAACAATTAAAGGGTTACATAAACTTCAATATTTAGATCTTGATGACAATGGACTTCAAGGATCTTTAGTTCATGAGCTTTGTGAAATTAGGGGTTTGAGTGAGTTGTATTTAACAAACAATAAGCTTTTTGGTGTGTTGCCAACATGCTTGGGAAACATGACCTCTCTTAGAAAGTTTCACATTGGATCTAATAACTTGAACTCTAAGATACCTTCTTCCTTTTGGAATCTCAAAGATATTTTAGAGGTAAACTTATCCTCTAATGCTTTAATTGGAAATCTTCCATTTGAGATTAAGAATTTGAGAGCTCTTGTACTATTAGATCTCTCAAAAAATCAATTTTCAAACAACATTCCACCAACCATAAGTCTCTTGACAACTCTAGAAACTCTCTCCTTAGCATATAACAAATTGAAAGGTCCTATCCCAACATCACTTAGTGAAATGGTAAGCTTGAACTTCTTGGACTTGTCTCAAAATCTTATAACCGGTGCGATCCCAAAATCTTTAGAGTCACTTTCATATCTTAAGTACCTTAATCTATCATACAATAGATTAGAAGGAGAGATTCCAAATGGAGGGCCTTTCAAAACCTTCACAGCTCAATCTTTCATTCATAACAAAGAACTTTGTGGCAGTCCTCACTTTCAAGTTCCTCCATGTGATAAACAAATTAGGAAAAAGTCAATGAAAAAGATGATATTAATCATATGCAGTTCATTGATAATCGTCGTGTTAGGCATTTTGGTTGTTGCGTGCATGATACTTCGAATGCATAAAAGGAAGAAGATTGGAAATCCAGTTGAAAATGATTTATCAACTTTAGGGGCTCCAAGAAGGATTTCCTATTACGAACTTGTGCAAGCAACGAATGGATTCAATGAGAGTAATTTACTTGGAAAGGGTGGTTTTGGATCTGTGTATCAAGGAATGCTTTCTAGTGGAAAGATGGTAGCAATTAAAGTACTTGACTTGAACTCGGAATCAACATCAAGAAGCTTTGATGCAGAATGCAATGCAATGCGCAACCTTAGACATCGAAATCTCGTTCAAGTTATCACTAGTTGTTCAAATGTTGATTTCAAATCTATAGTGATGGAGTTTATGACAAACGGAAGTTTGGAAAAATGGTTATACTCTGATAACTCTCGTTTGGATTTCTTGCAAAGATTGAATATAATGATAGATGTTGCGTCTGCGTTGGAGTATCTTCATCACGGTTCTTCAATACCAGTGGTTCATTGTGATTTGAAGCCTAGTAATGTGTTACTGGATGAAGATATGGTTGCACATGTAAGTGATTTTGGCATTTCCAAGCTATTGGATGAAGGACATTCTAAAACTCACACTGAAACTTTGGCTACTCTTGGTTATGTTGCACCAGAGTATGGTTCTAAGGGAGTCATTTCTGTTAAGGGAGATGTGTATAGCTATGGAATAATGCTAATGGAAATCTTCACAGCAAAGAAGCCAACAAATGAAATGTTTGCAGGAGAATTAACATTGAAAACTTGGATTAGTGAATCAATGGGAAGATCAATCATGGAAATTGTGGATTTCAATTTAGGCTCTCAACATGAGAAAAAAATTCATGAAATTTTAGCCTTAGCATTGAGATGTTGTGAAGATTCACCTGAGGCACGAATTAATATTATAGATGTAAGTACATCATTGATTAAAATCAAAACCTTATTCCTCCGTTTAAAAAAGGGAATCAAAACATAA 3423 0.3488 MSKPYSNWLCILSASLYYFFFTCLVMSTKKSITTDEFALLGFKSSITLDPYHMLSNWSIPSKSSFLSSCKWVGVTCDEHHGRVKALNLSNMGLQGTISPQLGNLSFLVVLDLQGNSFHGTIPHVIGQLRRLRILNIRDNVKLSGNIPTTISNMSSLQELHLSNNSLTGEIPKGIVDLTQLKTVNLEYNILTGNILFMFDNSSSLQNLNLGFNNLSGILPSNVCQGLPNLKLLYLFANEFSGKVPKVWRYCKELEDLELSFNNFDKEPLSADIGNLTKLQYLYLSNNNLEGAIPQSLFNISSLLEINFDINNLNGSLPQAMCHHLPQLEILTLRANYLEGFIPRSIGNCSTLQRLTLQDNFFTGSIPMEIGHLNQLQFLQFGNNSLTGSIPLSVLNISTLVSFLLHLNSLSGNLPSNMGFGLSNLLQLHLYGNKFVGKIPNSICNASSMYQLDLSENEFSGIVPSSLGDLTFLESLFLAGNNLTFIDDSHEFNFLTSLTSCRYLKYLDISQNSLLSNLPKSIGNLSVENFSANSCGINGNIPLEIGNISNLIRLSLSSNDLNGPIPITIKGLHKLQYLDLDDNGLQGSLVHELCEIRGLSELYLTNNKLFGVLPTCLGNMTSLRKFHIGSNNLNSKIPSSFWNLKDILEVNLSSNALIGNLPFEIKNLRALVLLDLSKNQFSNNIPPTISLLTTLETLSLAYNKLKGPIPTSLSEMVSLNFLDLSQNLITGAIPKSLESLSYLKYLNLSYNRLEGEIPNGGPFKTFTAQSFIHNKELCGSPHFQVPPCDKQIRKKSMKKMILIICSSLIIVVLGILVVACMILRMHKRKKIGNPVENDLSTLGAPRRISYYELVQATNGFNESNLLGKGGFGSVYQGMLSSGKMVAIKVLDLNSESTSRSFDAECNAMRNLRHRNLVQVITSCSNVDFKSIVMEFMTNGSLEKWLYSDNSRLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDEDMVAHVSDFGISKLLDEGHSKTHTETLATLGYVAPEYGSKGVISVKGDVYSYGIMLMEIFTAKKPTNEMFAGELTLKTWISESMGRSIMEIVDFNLGSQHEKKIHEILALALRCCEDSPEARINIIDVSTSLIKIKTLFLRLKKGIKT* 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4476 1140 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Psa1g4476 1140 ProSiteProfiles Protein kinase domain profile. 859 1132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4476 1140 Gene3D Transferase(Phosphotransferase) domain 1 935 1133 - -
Psa1g4476 1140 ProSitePatterns Protein kinases ATP-binding region signature. 865 887 IPR017441 GO:0005524
Psa1g4476 1140 Gene3D Ribonuclease Inhibitor 322 419 IPR032675 -
Psa1g4476 1140 Pfam Leucine rich repeat 129 188 IPR001611 GO:0005515
Psa1g4476 1140 Pfam Leucine rich repeat 596 656 IPR001611 GO:0005515
Psa1g4476 1140 Pfam Leucine rich repeat 277 337 IPR001611 GO:0005515
Psa1g4476 1140 SMART LRR_sd22_2 500 526 - -
Psa1g4476 1140 SMART LRR_sd22_2 715 741 - -
Psa1g4476 1140 SMART LRR_sd22_2 469 490 - -
Psa1g4476 1140 SMART LRR_sd22_2 571 600 - -
Psa1g4476 1140 SMART LRR_sd22_2 372 393 - -
Psa1g4476 1140 SMART LRR_sd22_2 691 714 - -
Psa1g4476 1140 SMART LRR_sd22_2 275 301 - -
Psa1g4476 1140 SUPERFAMILY RNI-like 420 758 - -
Psa1g4476 1140 Pfam Protein kinase domain 860 1118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4476 1140 SUPERFAMILY Protein kinase-like (PK-like) 839 1124 IPR011009 -
Psa1g4476 1140 Pfam Leucine Rich Repeat 503 524 IPR001611 GO:0005515
Psa1g4476 1140 Pfam Leucine Rich Repeat 742 758 IPR001611 GO:0005515
Psa1g4476 1140 Gene3D Ribonuclease Inhibitor 488 795 IPR032675 -
Psa1g4476 1140 SMART serkin_6 859 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4476 1140 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 20 147 - -
Psa1g4476 1140 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 141 264 - -
Psa1g4476 1140 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 326 1133 - -
Psa1g4476 1140 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 269 367 - -
Psa1g4476 1140 ProSitePatterns Serine/Threonine protein kinases active-site signature. 978 990 IPR008271 GO:0004672|GO:0006468
Psa1g4476 1140 Gene3D Ribonuclease Inhibitor 420 487 IPR032675 -
Psa1g4476 1140 Gene3D Phosphorylase Kinase; domain 1 842 934 - -
Psa1g4476 1140 Gene3D Ribonuclease Inhibitor 34 197 IPR032675 -
Psa1g4476 1140 Gene3D Ribonuclease Inhibitor 198 321 IPR032675 -
Psa1g4476 1140 SMART LRR_typ_2 104 128 IPR003591 -
Psa1g4476 1140 SMART LRR_typ_2 667 691 IPR003591 -
Psa1g4476 1140 SMART LRR_typ_2 324 348 IPR003591 -
Psa1g4476 1140 SMART LRR_typ_2 715 738 IPR003591 -
Psa1g4476 1140 SMART LRR_typ_2 153 177 IPR003591 -
Psa1g4476 1140 SMART LRR_typ_2 739 763 IPR003591 -
Psa1g4476 1140 SMART LRR_typ_2 595 618 IPR003591 -
Psa1g4476 1140 SMART LRR_typ_2 619 642 IPR003591 -
Psa1g4476 1140 SMART LRR_typ_2 469 493 IPR003591 -
Psa1g4476 1140 SMART LRR_typ_2 202 225 IPR003591 -
Psa1g4476 1140 SMART LRR_typ_2 275 299 IPR003591 -
Psa1g4476 1140 SMART LRR_typ_2 421 445 IPR003591 -
Psa1g4476 1140 SUPERFAMILY L domain-like 269 415 - -
Psa1g4476 1140 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 20 147 - -
Psa1g4476 1140 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 141 264 - -
Psa1g4476 1140 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 326 1133 - -
Psa1g4476 1140 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 269 367 - -
Psa1g4476 1140 SUPERFAMILY L domain-like 35 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4476 Psa-Chr1 347127652 347143756 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4476 523 760 Receptor kinase-like Gene Family AT3G47570 33.054 4.94e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Psa1g4476 Pkinase 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4476 - K13420 mtr:MTR_6g040210 1193.33