Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4475 ATGGAGTATGATAATTCAACTTGCAATGGAAACCTCAATGCAGTTTTAGATGTAAAGAATGATGCAACAAATATGTGTGATGACTCAAGCATTGGAGATGATGTTCCTCTTTTGCAGAAGTTGGTAGCAGAGGTGGTGGGAACATTCTTGTTAATATTTGTTGGATGTGGTTGTGTAGTTACAAATCTTAACAATGATAATGTAGTGACACTTCCTGGAATCGCAATTGTATGGGGACTTTGCGTTATGGTATTGGCATATTCTCTTGGCCATATCTCTGGTGCTCATTTTAATCCTGCTGTCACCATTGCTCATGCATCCACCAAGAGATTTCCATTGGAGCAGGTACCACCCTATATAATTGCTCAATTTATTGGATCACTACTTGCAAGTGGAGCTCTCAAACTTATATTTAGTGGCAAAGAAAATCGTTTTGTGGGAACAGTTCCAGCCGGTTCTAACCTCCAAGCTTTTGTCATTGAATTGATAATTACTTTCTACCTGATGTTCATCATTTCTGGAGTTGCCACCGATGATAGAGCGATCGGTGAATTGGCCGGACTTGCAGTTGGATCTGTAATTATTCTAAATGTGCTGTTTGCGGGGCCAATCACAGGAGCATCAATGAATCCGGTAAGAAGTTTAGGTCCAGCTATTGTGCACCATGAATATAGAGGAATATGGATTTACGTGGTTGCACCGATTCTAGGAGCTTTGGCTGGTACATGGGCGTATACTTTTATCAGAATCACAAACAAATCAGTACATCAGCAGCTCACAAAGAGTTGTTCATTTCTTAAAAATTCGGGAAGCAAATAA 819 0.4005 MEYDNSTCNGNLNAVLDVKNDATNMCDDSSIGDDVPLLQKLVAEVVGTFLLIFVGCGCVVTNLNNDNVVTLPGIAIVWGLCVMVLAYSLGHISGAHFNPAVTIAHASTKRFPLEQVPPYIIAQFIGSLLASGALKLIFSGKENRFVGTVPAGSNLQAFVIELIITFYLMFIISGVATDDRAIGELAGLAVGSVIILNVLFAGPITGASMNPVRSLGPAIVHHEYRGIWIYVVAPILGALAGTWAYTFIRITNKSVHQQLTKSCSFLKNSGSK* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4475 272 TIGRFAM MIP: MIP family channel proteins 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4475 272 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4475 272 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4475 272 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4475 272 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4475 272 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4475 272 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4475 272 Pfam Major intrinsic protein 35 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4475 272 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4475 272 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 4 268 - -
Psa1g4475 272 PANTHER AQUAPORIN NIP2-1 4 268 IPR034294 -
Psa1g4475 272 SUPERFAMILY Aquaporin-like 36 256 IPR023271 -
Psa1g4475 272 Gene3D Glycerol uptake facilitator protein. 14 261 IPR023271 -
Psa1g4475 272 ProSitePatterns MIP family signature. 96 104 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4475 Psa-Chr1 347120121 347121335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4475 23 272 Major Intrinsic Protein MIP AT5G37820 57.600 4.12e-95 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4475 K09874 - gmx:100812577 392.119