Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4468 ATGGTAGCACCTGTAATTGATAATGGATTTCGTAGCAGAAAGAAATCATCAAGAGGACACCACAGGTTTGTAGGAGTTCGTCAAAGGCCGTCGGGAAGATGGGTGGCAGAGATCAAAGACTCTTTACAGAAAGTTAGGCTTTGGCTCGGAACATTCGACACGGCTGAAGAAGCCGCTCGTGCTTATGATACAGCTGCTAGAGCTTTGAGAGGTGCTAATGCTAGAACCAACTTTGAGTTGCCAGAATCTGCAACAAATGGAGGTGATGCTAAGCGCGTTTCGGGTTCAGGTTCGGGTTCTAAGTTCATGCTAGAGAATACTGAGCCTTTTTCTTTTGAAGATGTTAGTGAATCAGGTTCAGGTTCTGAAGGTCTTCTTGGTGCACTCAAAGCAAAACTTTGTGATGGAAAAGAAGGGAAATTTTCATTTTCATTTCCTTCTGCTAGTATAGTTTCGAAATCAACACAAAACAGTTCTTGGAAGAAAGAATCATCATTATCATCATCATCAGCTACTTATTGTCTCTCTCAGATGAATGAAACTCATGCTAACACTATACCAAACTCATTGAGTATTTCATCAAACACTTTTGCTAAGAGTTTGATCATCCCAAATCATGATCATGAAATATCTCAAACTCAAACACAACCTATGACAAACATGTTATGGTCCAACGAAATCGAAAATGAATATCCTTGGCCTATTCAGATGAATCATGTTCTTCATGACAGTAGTACTACTAATCTTCTTGCATCTGCAAGTGCATCAAATTTTCCATGGCCACTAATAGATTCCAACATTGACATGACATGTATAGATCAAGGGATATTAAATAGTAACAGAAATGATCAAATCGATATGATTAACATGCAGTTACCTCAAGCTGGTGGATCAAATACTGAGGGGTTTTGGACAATGGATCATCAGGAACAACAGTTTGTGCAATGTGAGGAGAATAATAGTTGGTTTGGTTCCGGTGGATCTTGGAATCCTTTTATCTACGTGCCTTCTGAGCTAGCTTGA 1023 0.3949 MVAPVIDNGFRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEEAARAYDTAARALRGANARTNFELPESATNGGDAKRVSGSGSGSKFMLENTEPFSFEDVSESGSGSEGLLGALKAKLCDGKEGKFSFSFPSASIVSKSTQNSSWKKESSLSSSSATYCLSQMNETHANTIPNSLSISSNTFAKSLIIPNHDHEISQTQTQPMTNMLWSNEIENEYPWPIQMNHVLHDSSTTNLLASASASNFPWPLIDSNIDMTCIDQGILNSNRNDQIDMINMQLPQAGGSNTEGFWTMDHQEQQFVQCEENNSWFGSGGSWNPFIYVPSELA* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4468 340 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Psa1g4468 340 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Psa1g4468 340 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Psa1g4468 340 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Psa1g4468 340 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Psa1g4468 340 MobiDBLite consensus disorder prediction 1 21 - -
Psa1g4468 340 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 7 335 - -
Psa1g4468 340 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Psa1g4468 340 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Psa1g4468 340 SUPERFAMILY DNA-binding domain 23 79 IPR016177 GO:0003677
Psa1g4468 340 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4468 Psa-Chr1 346872695 346874935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4468 11 78 AP2-EREBP Transcription Factor Family AT5G19790 69.118 1.60e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa1g4468 AP2 9.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4468 - - mtr:MTR_2g016730 472.626