Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4464 ATGGAGCAAGTTCAGATTAGTTTAAACTCTGTACCACCTTTTCTGGCTAAGACTTATATGATGATCAGTGATCCTACAACTGATGCCATTGTTTCATGGAGTGCGACCAATAGAAGTTTTGTTGTTTGGGATCAGCCTGAGTTTTCGAAGGAATTGTTGCCTAGATTCTTTAAACATAACAACTTCTCAAGTTTTGTTAGACAGCTTAACACCTATGGTTTTAGTAAGGTTGGTCAAGACCAATGGGAATTCTCAAATGAAGACTTTGTAAGAGATCAACCAGATCTCATGAAGAATATCCACAGACGCAGACCAGTTTTTAGCCATTCTCCATCTAATGCTCATAGGCAACACACTGCGACTTCTGGTGTTACTGCTGGTGTTGGTGTTGCTGCTCCATTAACAGAATCAGAACGGCGGAATTTCAAAGCCCTGATAGAAAACCTTAGACATGAAAAAGAAGAGCTACTTATGGAACGTCAGAGGCAACAAGAGGAGGGGAATCAAAATGAGATGCAGTTACGTTCCTCGAAGGATCGCTTGCAGCAGTTGGAACTAAATCAACAAACTTTGCACTCTTCCCTAGGTCAAGTGCTTCAGAAATCTGCGGAAGAGGCAAGTCTCCTGCCATCTACAGTAAATAAAGGGACAAAACGAAGTTATCTGGGAATTTTTTCCTATAAAAATTTAGCAAGCATTAAACTTCTGAAGGAAACTTCGGAAGAGTTATCTAGAGCGAATGCTGAGAGTGCGTCCGTTCTCAGGATAAACATGGAGCGATTGGATCTGCTCGAGTCATCATTGGCATTTTGGGAGAGTCTTGCAAAAGAAGTTATAGACACATCTTTTGAAACTGGTGCAAAGTTGAACTTTGATGATTTTATGAATCCTCCACATGATCCCGGAATGTCTCGTGCGCAACTAGATTTTGAAGTTCCGCCCGAGTCATCAGGAAACAAAGTTAACTCTCTGCCAGATTCAGCCGTTGTTCCTGATCCTAATCCAGTTGAACTCGACTTGGATGATCCTGTTGTACCAGAGCCCGCTGCTATCGCGGTTCCTGATCCAGTTGCACCTGGGCCGGTTGTTACCGTTGTTCTTGACTCCACTACACTGAAAGAGCAACCTGTCGGAACAATCCCGGGTACTACTGAATTTAATACACCATTTTGGCAAAAATGCTTGCTGGAAGATCCTTATGAGTTTGAATCAGAAAATCCCCGTGAAATTAGAAAATACTGCTGGAGCGTCAAGGATCGAAAAAAACCTTAG 1272 0.4237 MEQVQISLNSVPPFLAKTYMMISDPTTDAIVSWSATNRSFVVWDQPEFSKELLPRFFKHNNFSSFVRQLNTYGFSKVGQDQWEFSNEDFVRDQPDLMKNIHRRRPVFSHSPSNAHRQHTATSGVTAGVGVAAPLTESERRNFKALIENLRHEKEELLMERQRQQEEGNQNEMQLRSSKDRLQQLELNQQTLHSSLGQVLQKSAEEASLLPSTVNKGTKRSYLGIFSYKNLASIKLLKETSEELSRANAESASVLRINMERLDLLESSLAFWESLAKEVIDTSFETGAKLNFDDFMNPPHDPGMSRAQLDFEVPPESSGNKVNSLPDSAVVPDPNPVELDLDDPVVPEPAAIAVPDPVAPGPVVTVVLDSTTLKEQPVGTIPGTTEFNTPFWQKCLLEDPYEFESENPREIRKYCWSVKDRKKP* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4464 423 Coils Coil 139 166 - -
Psa1g4464 423 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 409 IPR027725 -
Psa1g4464 423 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Psa1g4464 423 Gene3D - 6 104 IPR036388 -
Psa1g4464 423 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 409 - -
Psa1g4464 423 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g4464 423 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g4464 423 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g4464 423 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g4464 423 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4464 Psa-Chr1 346755380 346757412 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4464 6 328 HSF AT4G18880 40.303 1.36e-60 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa1g4464 HSF_DNA-bind 3.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4464 K09419 - gmx:100798004 330.872