Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4463 ATGATGGTCAGTGATCCTACAACTGATGCCATTGTTTCATGGAGTGCTACCAATAGAAGTTTCGTTGTTTCGGATCAGCCTGAGTTTTCGAAGGAATTGTTGCCTAGATTCTTTAAACATAACAACTTCTCAAGTTTTGTTAGACAGCTTAACACCTATGGTTTTAGTAAGGTTGATCAAGACCAATGGGAATTCTCAAATGAAGACTTTGTAAGAGATCAACCAGATCTCATGAAGAATATCCACAGGCGCAGACCAGTTTTTAGCCATTCTTCGCCTAATGCTCATAGGCAACGCGTTGCGACTTCTAGTCCTGCTGCTAGTGTTGGTGGTGGTGTTGCTGCTCCATTAACAGAATCAGAACGGAGGAATTTCAAAGCTCAGATAGAAAATCTTAGACATGAAAAAGAAGAGCTACTTATGGAACGTCAGAGGCAGCAAGAGGAGGGGAATCAAAACGAGATGCAGTTACGTTCCTCAAAGGATCGCTTGCAGCAGTTGGAACTAAATCAACAAGCTTTGCACTCTTCCCTTGGTCAAGTGCTGCAAAAATCTGCGGAAGAGGCAAGTCTCCTGCCATCTATAGGAAATATGGGGACAAAACGAAGTTATATGGGAAATTGTCCCTATAAAAATTTAGCAAGCATTAAACTTCCGAAGGAAACTTTGGAAGAGTTATCTAGAGTGAATGCTGAGATCTTGCAAAAGAAGTTACAGACACATCATTTTGAAACTGGTGCAAAGTTGAACTTTGATGATTTTATGAATCCTCCACATGGTCCCGGAATGTCTCGTGCGCAACTAGATTTTGAAGTTCCGCCCGAGTCATCAGGAAATAAAACTAACTCTCTGCCAGATTCAGCTATTGTTCCTGATCCAGATCCAGTTGAACTCGACTTGGACGATATATTTATTTATGATCCTGTTGTACCAGAGCCAGCTGCTATCGCGGTTCCTGATCCAGTTGCACCTGGGCCAATTGTTACCGTTGTTCCTGACTCCACCACACTGAAAGAGCAACCTGTCGGAACAATCCCGGGTACTACTGAGTTTAATACACCATTTTGGCAAAAAAGCTTGGTGGAATATCCTTATGAGTTTGAATCAGAAAATTCCCGTGAAATTAGAAAATACTGCTGGAGCATCAAGGATCGAAAAAAACCTTAG 1167 0.419 MMVSDPTTDAIVSWSATNRSFVVSDQPEFSKELLPRFFKHNNFSSFVRQLNTYGFSKVDQDQWEFSNEDFVRDQPDLMKNIHRRRPVFSHSSPNAHRQRVATSSPAASVGGGVAAPLTESERRNFKAQIENLRHEKEELLMERQRQQEEGNQNEMQLRSSKDRLQQLELNQQALHSSLGQVLQKSAEEASLLPSIGNMGTKRSYMGNCPYKNLASIKLPKETLEELSRVNAEILQKKLQTHHFETGAKLNFDDFMNPPHGPGMSRAQLDFEVPPESSGNKTNSLPDSAIVPDPDPVELDLDDIFIYDPVVPEPAAIAVPDPVAPGPIVTVVPDSTTLKEQPVGTIPGTTEFNTPFWQKSLVEYPYEFESENSREIRKYCWSIKDRKKP* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4463 388 MobiDBLite consensus disorder prediction 91 105 - -
Psa1g4463 388 Gene3D - 1 85 IPR036388 -
Psa1g4463 388 PRINTS Heat shock factor (HSF) domain signature 33 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g4463 388 PRINTS Heat shock factor (HSF) domain signature 46 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g4463 388 SUPERFAMILY "Winged helix" DNA-binding domain 2 84 IPR036390 -
Psa1g4463 388 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 2 374 - -
Psa1g4463 388 Coils Coil 122 149 - -
Psa1g4463 388 SMART hsfneu3 2 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g4463 388 MobiDBLite consensus disorder prediction 90 113 - -
Psa1g4463 388 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 374 IPR027725 -
Psa1g4463 388 Pfam HSF-type DNA-binding 2 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4463 Psa-Chr1 346741076 346742678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4463 17 195 HSF AT4G18880 52.514 1.62e-51 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa1g4463 HSF_DNA-bind 3e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4463 K09419 - gmx:100798004 248.44