Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4459 ATGGCTGATCATTCATCAAGCAATGGAAACCATGAAATAGCTTTGAATGTAAATGATGATTCCTCCAAAAATTGTGAAGATAACACTGTGCCTCTTTTGCAAAAGTTGGTGGCAGAAGTGGTGGGGACATACTTCTTGATATTTGCAGGATGTGCTGCCGTTGTTGTAAACCTTGACAATGACAAAGTGATAACACATCCTGGGATTTCAATTGTTTGGGGCCTCACTGTTATGGTTTTGGTTTATTCTCTCGGTCACATCTCCGGTGCTCATTTCAATCCGGCCGTCACCATCGCCCACGCGTCGACCAAAAGATTTCCTCTCAAAGAGGTACCAGCTTATTTAATAGCACAAGTTCTTGGATCAACTCTAGCAAGTGGAACACTTAGGCTTATATTCAATGGAAATAAAGATCATTTCCCCGGAACACTTCCGGCTGGTTCTGATCTTCAAGCATTTGTGGTTGAATTTATCATCACTTTTTATCTTATGTTCATCATCTCTGGAGTTGCCACCGATAATAGAGCGATTGGCGAATTGGCTGGACTTGCAGTTGGGTCTACGGTACTTCTAAATGTCATGTTTGCTGGGCCAATTACGGGAGCATCAATGAACCCTGCAAGAAGTTTAGGGCCTGCTATTGTTCATAAGGAGTACAGAGGAATATGGATATATTTGGTGGCGACGACTCTTGGTGCCGTGGCCGGTACATGGGCGTATACTTTCATTCGGTACACGAACAAGCCGGTGCGCGAAATTAGTAAGAGTGCGTCTTTTCTTAGAGGAGTACAAAATGGTGGATCAAAGTGA 810 0.4346 MADHSSSNGNHEIALNVNDDSSKNCEDNTVPLLQKLVAEVVGTYFLIFAGCAAVVVNLDNDKVITHPGISIVWGLTVMVLVYSLGHISGAHFNPAVTIAHASTKRFPLKEVPAYLIAQVLGSTLASGTLRLIFNGNKDHFPGTLPAGSDLQAFVVEFIITFYLMFIISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHKEYRGIWIYLVATTLGAVAGTWAYTFIRYTNKPVREISKSASFLRGVQNGGSK* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4459 269 CDD MIP 34 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4459 269 PANTHER AQUAPORIN NIP2-1 1 264 IPR034294 -
Psa1g4459 269 PRINTS Major intrinsic protein family signature 34 53 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4459 269 PRINTS Major intrinsic protein family signature 73 97 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4459 269 PRINTS Major intrinsic protein family signature 110 129 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4459 269 PRINTS Major intrinsic protein family signature 155 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4459 269 PRINTS Major intrinsic protein family signature 186 208 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4459 269 PRINTS Major intrinsic protein family signature 223 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4459 269 TIGRFAM MIP: MIP family channel proteins 38 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4459 269 Gene3D Glycerol uptake facilitator protein. 3 256 IPR023271 -
Psa1g4459 269 SUPERFAMILY Aquaporin-like 29 253 IPR023271 -
Psa1g4459 269 Pfam Major intrinsic protein 29 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4459 269 ProSitePatterns MIP family signature. 91 99 IPR022357 -
Psa1g4459 269 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4459 Psa-Chr1 346593853 346595716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4459 1 264 Major Intrinsic Protein MIP AT5G37810 53.650 1.75e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4459 K09874 - gmx:100786924 457.218