Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4456 ATGCAAAATCAGCAACAGCCCCTGACTATTTTCTACGATGGCAAGATCTGTGTTACTGATGTCACAGAGTTTCAGGCCAAATCAATCTTAATGCTGGCAAATAAAAAAGTGCAAGAAATAGTGAAGACGCCAACAGGATCAGAGCCATCAACACCAACAATGGTACAATCTCCTCATCAATCATGTAGCCATGCTCCTGGTCTTTCAATGAAAAGATCTTTGCAACGGTTTCTTCAAAAGAGAAAAAATAGGATTCAACAAGCTTCTCCGTACAATCATTAG 282 0.3972 MQNQQQPLTIFYDGKICVTDVTEFQAKSILMLANKKVQEIVKTPTGSEPSTPTMVQSPHQSCSHAPGLSMKRSLQRFLQKRKNRIQQASPYNH* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4456 93 SMART tify_2 1 35 IPR010399 -
Psa1g4456 93 ProSiteProfiles Tify domain profile. 1 35 IPR010399 -
Psa1g4456 93 MobiDBLite consensus disorder prediction 43 68 - -
Psa1g4456 93 Pfam Jas motif 71 91 IPR018467 -
Psa1g4456 93 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 2 93 IPR040390 -
Psa1g4456 93 MobiDBLite consensus disorder prediction 43 71 - -
Psa1g4456 93 PANTHER - 2 93 - -
Psa1g4456 93 Pfam tify domain 4 34 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4456 Psa-Chr1 346514881 346515378 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4456 4 91 Tify Gene Family AT1G30135 46.067 1.03e-17 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Psa1g4456 tify 4.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4456 - - gmx:100803886 139.428