Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4449 ATGACTAGGGCTATTCGGAATAGGGTACTCAAAGATGCTAATGGTGATATTAGTGATCATTTACGCAACCATATTCATTTAACAAATTGTATTCACTTGAAGAACCATATGCATAAAAACAGTCCAATACTTGCTGATAGGTCTATAATGAGAGACCTTGTTGTGCTTCAAAGATCGCGTTCTCTTCGGGATCCTTCTGCGAGTCCTCCGTCATGGCATTCTCCTTCTGTGGTTGACTTGCTTTTCAAAAGGGCAGAAAATGATGCTGTGAATCAAGGGGGGAGAAGGTCGGTAGGTGTTGATAGTCGGAAGGAAGGTAGGAAACCGTCTGGAATCAGAAACTCGCCACCTTTGGTGAGTAAAGGTACATCAAGGGTTGCTCCAGGTGAGGCTAGTAGGAGTAACGATGCAGTGCCGGCGGCAACTAGTGAGCGAAGTAGTAGGAGCGGAATCGGGGATGGAAGGAGAGTTGGGAGGGAAGAATCTGGCCGGAAGAGTAATAGGCCTGATTATTTGGAAGGTATCGGTCAAGAGCAACTTCTTCATGAGGCCGGCAAAAGTTTGGCTGAAGATATTGTTTCGAGGCATTCTCAATCTTTAGAGAGAAAGAGTAGACAGCGGGGAAAGAATGTTCGAGAAGTTCAAGTTAAGACTCTTTCTGAACAGCTGAATGATGTTCCTTTGGATAGTGATGATTTGGCATCATCAAACATTCATTTTCGGGCAAGGTTTCCAACACAAGAGAAAATTGTTGAGGCACAACAAGCCAGCATGCGCAGTCATGGAAATGGAATGAATAGGACAAAAAGGCGTAAATTCCGAAGTGCGAGAAGAGCTCGGGTTGCTACAACGTCAAGAGATATTGGAGCCGAGAATGAATTGTCCGTGGCTTCAAACTCATTAGCTGAGGGTTCAGCTCACCAGAAATATCACTCGGAGGAGGTCAATGATTATGCAAATGATAATGTTACTAGAGCACCAAAAAATGGGTGTGGCATGCCTTGGAATTGGTCTAGAATTCATCATAGAGGTAAATCTTTCCTTGACATTGCTGGAAGAAGTTTGTCCTGTGGTTTATCTGACTCAAGGTTAAAGAAAGGGACATCTTTAGCTTCAAATGGAAGAAATATTTCTGTGATGCCTGTGGCAGCTGACGGCTCTAGCTCATGTACTAACTCTGAAGCAGAGGCACTGCCTTTACTAGTTGACGCATCTGGATCTCATGGAAGCACGGAAAATGCTTGTTGGGGTCGTGGTTATTCAGGCGAACTATGTATTTATGGTGACAATTTATTGAAGCAAGATATCGATTCTGATCTTGCTTCTGAAGCTAGATCTGGTAGCCAACATAATAAGTTGAGACGGAATCATCATAGTAGACACCAAAGTTTAACACAAAAGTATATTCCACGAACCTTCAGAGATATGGTTGGACAGAATTTAGTGGCACAAGCTCTTTCGAATGCTGTGATGAGACGGAAAGTTGGATTGCTGTATGTGTTTTATGGTCCCCATGGCACCGGAAAAACTTCCTGTGCTCGCATATTTGCAAGAGCTTTGAATTGCAGTTCGATAGAACACCCAAAACCTTGTGGCTTTTGCAATTATTGCATAGCACATGATATGGGAAAGAGTAGAAATATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTTGAGAACATCATGGATCTACTCGATAATATGACTGTTTCCCAGCTTCCATCACAGTACAGAGTGTTTATTTTCGATGATTGTGATACTCTATCGGCTGATTGTTGGAACGCTATATCCAAGATCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTACTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGTTGAAGGATTCGGATATTGTAAATACACTGCAGTGGATTGCAACCAAAGAAGGTCTCGATATTGATAAGGATGCCCTTAAACTCATCGCATCAAGGTCTGACGGATCATTGAGAGACGCTGAGATGACACTTGAACAGCTTAGTTTGCTTGGGCAAAGAATTTCCGTTCCTCTTGTTCAAGAATTGGTAGGACTTATCTCTGATGAAAAGTTGGTGGATCTGCTTGATTTGGCATTATCTGCGGACACGGTAAACACTGTAAAAAATTTGAGAGTGATAATGGAAGCAGGAGTTGAACCATTAGCTTTGATGTCACAGCTTGCCACAGTAATTACAGATATACTTGCTGGGACCTATGATTTCGCTAAAGAAAGGCGAAGAAGGAAGTTCTTCCGAAGACAACCATTGTCCAAAGAAGACATGGAAAAGCTTCGTCAAGCTTTGAAAACTTTATCTGAGGCGGAGAAGCAGTTAAGAATGTCTAATGACAAGCTAACCTGGTTGACAGCTGCATTGCTTCAACTTGCTCCTGACCAGCAGTATGGGCTGCCGACTTCATCTGATAATAGTTTCCACCATAGTCCCTTCGCTCTAAATAATGGAAATGTGAAAGAAGGTACTACTAGAAACACTGGTAAACCTGTTGAAATTCCTAACAGAACAAGACGATTATCAATGGATGCTAGAATGGAAAATTCTAATGCTGGAAACTCAACAGATAGAAGACATAGCGTCTCTGGTTTTGCTCCTCAACATACTTGTTCACATTCCACTGACAAGACTAGGATAAATGAAAGGCAGAATTTGGATAAAAGCCGCAAAGAAATCGAAGACATATGGTTAGAGGTGCTAGAGAGGATTAACTATCCTGGTCTCAAAGAGTTTTTGTATAAAGCAGGAAAGCTGATCTTCATTAGTTTTGGGGCAGCTCCAACTGTGCAACTAATGTTTAACTCTCAACTTTCAAAATCTACGGCTGAGAAGTTCACTGGTCACATCTTACAAGCATTTGAATCTGTCCTTGGATCTTCTGTAACCATAGAAATTAGATGTGAATCAAATAAAGATGCAGGCTTGCCTCTTGTATTGCCTGCTATGAATGATGGTTCATCTCAAATACGAGACTTAATTGAAATTGGCACTGAAAAGAGAAGGGGTGAAATTGTAGAAGAAGAAGAAGATGAAGAAGCCTCTCATATGGAGCACAAGAATATTGGGCAGCAGGGTATGGGACAAGTGTCGACGTCTCAAAAAACACCGATTGTTGTGTCACATAGTCAAAGTCGAAGTCTTGTAAGAAGTAAGGTATCTCTTGCTCATGTAATCCAGCAAGCAGAAAGTCAACGAAGTGGATGGTCAAAACGTAAAGCAGTTTCTATTGCTGAAAAGCTCGAACAAGAGAATCTGAGACTGGAGCCAAGATCAAGGAGCTTGCTAGGCTGGAAAGCATCTAGAGCAACTCGTCGGAAGCTGTCGCGGTTGAAAATACGAACCCGAAAAACACGTGCATTGTTGAATCTTATCTCATGTGGGCAATGTCTCTCCACAAAATCTCCCAGATCACAACCAACTTCTGATTTCTTCATGTTCAAGCAAGATTTGTGGCCACACTACAGCAGCAAAATCAAATTCCATTTTCAGTCACCTTTATTTTCCTTGATGTACCACCTTAATATCTCACAAGACAGATAA 3597 0.417 MTRAIRNRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDLLFKRAENDAVNQGGRRSVGVDSRKEGRKPSGIRNSPPLVSKGTSRVAPGEASRSNDAVPAATSERSSRSGIGDGRRVGREESGRKSNRPDYLEGIGQEQLLHEAGKSLAEDIVSRHSQSLERKSRQRGKNVREVQVKTLSEQLNDVPLDSDDLASSNIHFRARFPTQEKIVEAQQASMRSHGNGMNRTKRRKFRSARRARVATTSRDIGAENELSVASNSLAEGSAHQKYHSEEVNDYANDNVTRAPKNGCGMPWNWSRIHHRGKSFLDIAGRSLSCGLSDSRLKKGTSLASNGRNISVMPVAADGSSSCTNSEAEALPLLVDASGSHGSTENACWGRGYSGELCIYGDNLLKQDIDSDLASEARSGSQHNKLRRNHHSRHQSLTQKYIPRTFRDMVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCSSIEHPKPCGFCNYCIAHDMGKSRNIREVGPVSNFDFENIMDLLDNMTVSQLPSQYRVFIFDDCDTLSADCWNAISKIIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDIVNTLQWIATKEGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMEAGVEPLALMSQLATVITDILAGTYDFAKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYGLPTSSDNSFHHSPFALNNGNVKEGTTRNTGKPVEIPNRTRRLSMDARMENSNAGNSTDRRHSVSGFAPQHTCSHSTDKTRINERQNLDKSRKEIEDIWLEVLERINYPGLKEFLYKAGKLIFISFGAAPTVQLMFNSQLSKSTAEKFTGHILQAFESVLGSSVTIEIRCESNKDAGLPLVLPAMNDGSSQIRDLIEIGTEKRRGEIVEEEEDEEASHMEHKNIGQQGMGQVSTSQKTPIVVSHSQSRSLVRSKVSLAHVIQQAESQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLGWKASRATRRKLSRLKIRTRKTRALLNLISCGQCLSTKSPRSQPTSDFFMFKQDLWPHYSSKIKFHFQSPLFSLMYHLNISQDR* 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4449 1198 CDD AAA 477 636 - -
Psa1g4449 1198 MobiDBLite consensus disorder prediction 149 168 - -
Psa1g4449 1198 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 462 810 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Psa1g4449 1198 Gene3D - 637 699 - -
Psa1g4449 1198 Coils Coil 772 799 - -
Psa1g4449 1198 Pfam DNA polymerase III, delta subunit 479 636 - -
Psa1g4449 1198 Gene3D - 453 633 IPR027417 -
Psa1g4449 1198 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 194 1017 - -
Psa1g4449 1198 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 1007 1123 - -
Psa1g4449 1198 MobiDBLite consensus disorder prediction 88 171 - -
Psa1g4449 1198 MobiDBLite consensus disorder prediction 264 279 - -
Psa1g4449 1198 SUPERFAMILY post-AAA+ oligomerization domain-like 707 810 IPR008921 GO:0003677|GO:0006260
Psa1g4449 1198 MobiDBLite consensus disorder prediction 443 465 - -
Psa1g4449 1198 MobiDBLite consensus disorder prediction 1028 1047 - -
Psa1g4449 1198 Pfam DNA polymerase III subunits gamma and tau domain III 692 810 IPR022754 GO:0003887
Psa1g4449 1198 PANTHER PROTEIN STICHEL-LIKE 3 194 1017 - -
Psa1g4449 1198 PANTHER PROTEIN STICHEL-LIKE 3 1007 1123 - -
Psa1g4449 1198 MobiDBLite consensus disorder prediction 866 894 - -
Psa1g4449 1198 MobiDBLite consensus disorder prediction 866 892 - -
Psa1g4449 1198 CDD HLD_clamp_pol_III_gamma_tau 636 699 IPR045085 -
Psa1g4449 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 683 IPR027417 -
Psa1g4449 1198 SMART AAA_5 495 636 IPR003593 -
Psa1g4449 1198 MobiDBLite consensus disorder prediction 255 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4449 Psa-Chr1 346040771 346047012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4449 462 760 Core DNA Replication Machinery Family AT1G21690 24.013 1.98e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4449 - - gmx:100809005 1762.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4449 1 346040771 346047012 Psa1g4449 1 346040771 346047012 ECH