Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4445 ATGGCTTCAGGGGCAATTTTCTCGTCGCTGCGGCGGCGAAGATCGCCGACGTTGGAAGCTTTTCTTGCTCCGGTTGACTTAAGCGACGTTGCTTTGGTTCAGACTCTTGTTGCGGTGGTGAACGAGCTTGTTTCTTGTTTTACAAAGTGTTCGTTTTTCTTTCAGAGGAAGAACACGCGTTCTCTGATTAGAAAGGTTGAGGTTTTTCAGTTGCTTTTGGAGTATTTGAATGATTCGGGTTCTAAGGGTTGTAATCTTCCGTCTACGGCTTTGCTTTGTTTGAAGGAGCTTTATTTGTTGCTGTATAGGTCGAAGATTCTTCTTGATTACTGCGCGCAATCGAGTAAGTTATGGCTTTTGCTTCAGAATCATTCGATTTCGGGTCATTTTCATGATTTGAATCAGGAGATTTCAACTCTTTTGGATGTTTTTCCTGTTAAGGATGTTGGTTTGAGTAAGGATGTTAGGGAGCAGGTTGAGCTTTTGTTGAAGCAATCGAGGAGGGCTAAGCTTTTCATTGATATGGGAGATGATGCGCTTAGGATTCGTTTTTTTTCGTTTCTGGATGAGTTTGAGAATGGGAGGATTCCGGAATCAGATGAATTGCGGTGGTTTTATGTTGAGAAGTTGGGGATTGTTGATGCGGGTTGTTGTAGAGGTGAAATTGAGGCTTTGGAGGAGCAGATTGTTAACCATGAGGGGGATATTGAGCCTACGATTTCGGTGCTTAAAGGGTTGGTGGCTATGACGCGGTATTGTAGGTTTTTGATTTTTGGATTTGAGGAAGATGAGCTTGATTTGGAAAATGGAAATCAGACGAAGCCGAAGATGGGTTTGATTACTCAAGAGATTGCTGAAACGTTTTTAACTGTTCCGAAGGACTTTTGTTGTCCGATATCGTTGGACTTGATGAGAGACCCGGTGATTATTTCGACTGGTCAAACTTATGATAGGAGTTCCATTTCTAGGTGGATGGATGAAGGGCATACAACTTGTCCAAAAACAGGTCAAACGCTTGCTCACACTCGTCTTGTCTCAAATCGTGCCTTGAGGAATTTGATTGTGCAGTGGTGCAATGCTCATGGAATTCCTCTTGATCCGCCAGAGGTGATGGATGCAATGGGTGAAGCTTTTGGATCTGCTTCTCCCACCAAAGCTGCCCTTGAAGCAAATAAAGCTACTGCCAATCTTCTCATTCAACAGCTAGCTAATGGGTCGCAATCCGGAAAGACTATAGCTGCTCGGGAGATTCGGTTGCTTGCAAAAACGGGCAGAGAAAATCGTGCCTTCCTTGCAGAAGCGGGGGCAATTCCTTATCTTCGGAACTTACTTTCGACGCCTAATTCCGTTGCTCAGGAGAATTCAGTTACTGCATTGCTCAACCTATCCATTTACGACAAGAACAAAAGCAGGATCATGGACGAGTCAGGTTGTCTTGGATCAATTGTTGATGTGTTGAGATTTGGGCATACAACAGAAGCACGGGAAAATGCTGCTGCAACGTTGTTCAGCCTATCAGCAGTCCATGACTATAAGAAGATAATTGCGGACGAGACTGGAGCTGTTGAAGCCCTAGCAGGGCTTTTGCAAAATGGGACTCCTAGAGGAAAGAAGGATGCAGTGACAGCTCTGTTCAATCTTTCGACACACACCGAGAATTGTGTTAGAATGATCGAGGCAGGAGCAGTAACAGCTCTAGTCGAGGCTTTGGGCTACGAAGGAGTTGCCGAGGAAGCAGCAGGTTCCCTGGCCTTGATTGTTCGGCAGCCTTTTGGAGCCAAAGCAGTAGTCAAACAGGAAGAAGCCGTAGCAGGATTGATAGGAATGATGCGTTGTGGAACGCCGAGAGGCAAAGAAAATGCAGTTGCAGCATTACTCGAGTTATGTCGGAGTGGAGGTTCAGCTGCAACCGAAATGGTGGTTAAGGCACCAGCTTTGGCCGGATTACTTCAAACCCTACTATTTACCGGAACAAAGCGAGCTAGACGAAAAGCCGCTTCACTCGCGAGAGTGTTTCAGAGATGTGAAAATGCATCTCTACATTATGGTGGATTAGGTGTAGGCTATGCATACGCTAGCAATTCAGCTCAAACTAGGGATACAAGCTTCGCTGCTGGTGATGTTTCAGTACCAATGTCCATCTCTGTACCTGTATTATAG 2160 0.4528 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVAVVNELVSCFTKCSFFFQRKNTRSLIRKVEVFQLLLEYLNDSGSKGCNLPSTALLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDVGLSKDVREQVELLLKQSRRAKLFIDMGDDALRIRFFSFLDEFENGRIPESDELRWFYVEKLGIVDAGCCRGEIEALEEQIVNHEGDIEPTISVLKGLVAMTRYCRFLIFGFEEDELDLENGNQTKPKMGLITQEIAETFLTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHTTCPKTGQTLAHTRLVSNRALRNLIVQWCNAHGIPLDPPEVMDAMGEAFGSASPTKAALEANKATANLLIQQLANGSQSGKTIAAREIRLLAKTGRENRAFLAEAGAIPYLRNLLSTPNSVAQENSVTALLNLSIYDKNKSRIMDESGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADETGAVEALAGLLQNGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVEALGYEGVAEEAAGSLALIVRQPFGAKAVVKQEEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSAATEMVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAYASNSAQTRDTSFAAGDVSVPMSISVPVL* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4445 719 PANTHER U BOX DOMAIN-CONTAINING 12 699 - -
Psa1g4445 719 SMART arm_5 424 464 IPR000225 GO:0005515
Psa1g4445 719 SMART arm_5 550 588 IPR000225 GO:0005515
Psa1g4445 719 SMART arm_5 589 630 IPR000225 GO:0005515
Psa1g4445 719 SMART arm_5 509 549 IPR000225 GO:0005515
Psa1g4445 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Psa1g4445 719 Gene3D - 27 147 IPR036537 GO:0007166
Psa1g4445 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 364 IPR013083 -
Psa1g4445 719 CDD RING-Ubox_PUB 295 337 IPR045210 -
Psa1g4445 719 SUPERFAMILY ARM repeat 394 672 IPR016024 -
Psa1g4445 719 Gene3D - 394 670 IPR011989 -
Psa1g4445 719 Pfam Armadillo/beta-catenin-like repeat 425 463 IPR000225 GO:0005515
Psa1g4445 719 SUPERFAMILY RING/U-box 278 364 - -
Psa1g4445 719 SMART Ubox_2 294 357 IPR003613 GO:0004842|GO:0016567
Psa1g4445 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Psa1g4445 719 ProSiteProfiles U-box domain profile. 290 364 IPR003613 GO:0004842|GO:0016567
Psa1g4445 719 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 699 - -
Psa1g4445 719 Pfam U-box domain 291 361 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4445 Psa-Chr1 345738010 345741314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4445 1 719 U-box Gene Family AT1G29340 69.429 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4445 - - mtr:MTR_2g018010 1260.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4445 1 345738010 345741314 Psa1g4445 1 345738010 345741314 ECH