Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4439 ATGCTTACTGTAGTTGCCTATGTAGTTGATACACCTCGTGCGGAAAATCCCACCACTTTTATGAGCAACATGCTTTATGCTTGCAGTATCCTCTATAAGACAAGGTTACCTCTCATCTTGGCATTCAACAAGGTTGATGTAGCAAAACATGAATTTGCCCTGGAGTGGATGAAAGATTTTGAGGTATTCCAAGCAGCAGCAAGTCCAGATCAGTCATACACTTCAAATTTAACTCAGAGCCTTTCTTTGGCACTAGATGAATTTTACAGTAATTTAAGATCAGCTGGAGTTTCTGCAGTTACTGGTGAAGGAATTGAAGGCTTCTTCAAAGCTGTTGACGCCGGTGCAGAGGAATACATGGAAAGCTATAAGGATGATCTTGATAAAAGACGTGAAGAGAAATTGCGATTGGAAGAAAATCGCAGGAAGGAGAACATGGATAAACTGAGGAGGGAGATGGAGAAATCTGAAGAAGATGCTGCAATCTTAGTCCCAGGTGATATAATCCACATTAAATTAGGAGATATCATTCCTGCAGATGCTCGTTTTCTTGAGGGTGATGCTTTGGGTGTTGATCAGTCGACTTTAATTGGAGAATCTCTTCCGGCAACAAAGAATCCCTCAGATGAAGTCTTTTCTGGATCAACTGTTAAGAAGGGTGAGATTGAAGCAATTGTTATTGCTACCGGAGTGCACACACTTTTCGGTAAAGTTGCCTACCTTGTTGACAACACAAACCAAATTAGATGTTACTTCATAAGTCTTGAAAAGCTTGCTAGAAATTTGGAAGGAAAGGATGTTACTGGTGATAAAACTGCAAGCATATATGGCACTGATGAAAGTCAATTGAGCTCAAATATTGAGGGTGCCAACCAAAAAAGTGATAATAAAGTGCTTTCTGGAGGTCAGAATGACAATTTGGAGAGGTATGCACCACAGTGGGAATCCAAGAACCTCATGGCCGTGAGCGTTGCAATCCAGGATTGGCTAACTTCAAGGCTTGCGTTGGAGTTGATGAGGCAAGGGGCAATGCTGACTGTCTTGAGTGCACTTTTAACTGCATTGGCTTGGCCAGCTGCATTACGTTCAGCTACTGATTTCATAGACAGCATGTGGTCGATTGCTATTGACAGACCAGACAAGGCAGGGATACTGCTTTCTGAAGTATTATTAGGAGGAGTTCAAGGAAATAGACCTGTGACACTTATAGGTTACTCACTTGGAGCAAGAGTTATTTTCAAATGTTTAGAATGTTTGGCTGAAACAGAAAACCACGCTGAACTTGTGGAAAGAGTTGTCCTTCTTGGAGCACCCATTGCAATAAAATATGTGAATTGGGAAGCTGCTAGAAAGATCGTAGTAGGAAGGTTTATAAATGCTTATTCCAGGACTGACTGGATGCTTGGAGTGGCTTTCCGTGCCAGCCTACTTTCTCAAGGTTTAGCTGGGATCCAAAATGTTGACGTTACCGATCACATTGAAGGTCACTCTTCTTATTTGTGGACTACACAACATACCTTGGAGGAACTTGCACTGGAAACTTATTATCCTGCTTATAACAGCATTCTTCCTAAAGAGCAAACCCATCCCAATTTCACCGTTTCTTTTCTGAATATAAGGAACATAACTAGAATCAGCATCATTAATCAAGTGCAAAATAACTAA 1665 0.4114 MLTVVAYVVDTPRAENPTTFMSNMLYACSILYKTRLPLILAFNKVDVAKHEFALEWMKDFEVFQAAASPDQSYTSNLTQSLSLALDEFYSNLRSAGVSAVTGEGIEGFFKAVDAGAEEYMESYKDDLDKRREEKLRLEENRRKENMDKLRREMEKSEEDAAILVPGDIIHIKLGDIIPADARFLEGDALGVDQSTLIGESLPATKNPSDEVFSGSTVKKGEIEAIVIATGVHTLFGKVAYLVDNTNQIRCYFISLEKLARNLEGKDVTGDKTASIYGTDESQLSSNIEGANQKSDNKVLSGGQNDNLERYAPQWESKNLMAVSVAIQDWLTSRLALELMRQGAMLTVLSALLTALAWPAALRSATDFIDSMWSIAIDRPDKAGILLSEVLLGGVQGNRPVTLIGYSLGARVIFKCLECLAETENHAELVERVVLLGAPIAIKYVNWEAARKIVVGRFINAYSRTDWMLGVAFRASLLSQGLAGIQNVDVTDHIEGHSSYLWTTQHTLEELALETYYPAYNSILPKEQTHPNFTVSFLNIRNITRISIINQVQNN* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4439 554 SUPERFAMILY Calcium ATPase, transduction domain A 156 242 IPR008250 -
Psa1g4439 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 113 IPR027417 -
Psa1g4439 554 Gene3D - 230 246 - -
Psa1g4439 554 Gene3D - 1 131 IPR027417 -
Psa1g4439 554 Gene3D alpha/beta hydrolase 350 511 IPR029058 -
Psa1g4439 554 PANTHER TRANSMEMBRANE/COILED-COIL PROTEIN (DUF726) 302 521 - -
Psa1g4439 554 SUPERFAMILY alpha/beta-Hydrolases 396 518 IPR029058 -
Psa1g4439 554 PANTHER TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4 TMCO4 302 521 IPR007941 -
Psa1g4439 554 Pfam Conserved hypothetical ATP binding protein 3 114 IPR004130 -
Psa1g4439 554 Pfam Protein of unknown function (DUF726) 307 511 IPR007941 -
Psa1g4439 554 Pfam E1-E2 ATPase 148 247 - -
Psa1g4439 554 Gene3D - 148 229 - -
Psa1g4439 554 Coils Coil 120 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4439 Psa-Chr1 345595979 345597913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4439 148 248 Primary Pumps ATPases AT5G57350 73.267 3.08e-40 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4439 - - gmx:100782894 349.362