Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4434 ATGATGGTCAATGATCCTACAACTAATGCCATTATTTCATGGAGTTCTACAAATAGGAGTTTCATTGTTTGGGACGACCTTGAATTTTCGAAGGATTTGTTGCCTAGATTTTTTAGGCACAACAATTTCTCGAGTTTTATTAGACAGCTAAACACTTATGGCTTTAGAAAGATTGGTCAAAAGCAATGGGAATTCTCAAATGATGATTTTGTAAGAGATCAACCAGATCTCATGAAAAATATCTCCAGGCGCAAACCTGTTTTTAGTCATTCTGCGTCTTCTGGCTCTGGTGCTAGTGTTGCTGCTGCTGCTCCGTTAACAGAATCAGAGCGGCGAAATTTCAAGGCTCAGATAGAAAAATTTAGAGATGAAAAAAAACAACTGCAATTGGAACTGAATAACCAAAGCTTGCTCTCTACTGTTGGTCAAGTGCTGCAGAAATCTATAGAAGAGGCAAGTCTCCTGCCATCTACGGTAAACACGGGGACAAAACGAAGTTATCTGGGAAATTGTCCCTATAACAATTTAGCAAGCATTGAACTTCCGAAGGAAACTTCGGAAGGGTTAGCTAGAGCAAACGCTGAGAGTGCGTCCTTTCTCGGTACAAACATGGAAATATTAGATCAGTTGGACTCATCATTGACGTTTTGGGAGAATCTTGTAAAGGAAGTTACCGACACGTCTTATGAAACTGGGTCAAACTTGGGCTTTAATGATTCTTTGAATCGTGCACAACTAGATTTTGAAGTTCAGCCCGAGTCATCAGGATACAGAATGAACTCTCTATTAGATTTAGCCGTTGTTCCCGATCCTGATCTAGTTGAACTCGAGTTAGATGATATCTTCATTTATGATCCTGATGTACCAGAGCCAACTGTTGTCGCAGTTCCTGAACCAGTTGCACCTGAGACGGTTGTTATCGTTGTTCCTGACTCGGCTACACCGAAAGAACAACGTCTCGGAACAATCCCGGGTACTAATGAATTTAATTCACCATTTTGGCAAAGATACTTAGTGGAAGATCCTTATGAGTATGAATCAGAAAATCCCCGTGAAATTGCCAAATATTGCTGGAGCATCAGGGATCGAAAAAAATCTCAAATTTATCAAGCAGACAAAAAGCTTAGTGAAAAATGA 1137 0.4011 MMVNDPTTNAIISWSSTNRSFIVWDDLEFSKDLLPRFFRHNNFSSFIRQLNTYGFRKIGQKQWEFSNDDFVRDQPDLMKNISRRKPVFSHSASSGSGASVAAAAPLTESERRNFKAQIEKFRDEKKQLQLELNNQSLLSTVGQVLQKSIEEASLLPSTVNTGTKRSYLGNCPYNNLASIELPKETSEGLARANAESASFLGTNMEILDQLDSSLTFWENLVKEVTDTSYETGSNLGFNDSLNRAQLDFEVQPESSGYRMNSLLDLAVVPDPDLVELELDDIFIYDPDVPEPTVVAVPEPVAPETVVIVVPDSATPKEQRLGTIPGTNEFNSPFWQRYLVEDPYEYESENPREIAKYCWSIRDRKKSQIYQADKKLSEK* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4434 378 Coils Coil 111 138 - -
Psa1g4434 378 Gene3D - 1 85 IPR036388 -
Psa1g4434 378 SMART hsfneu3 2 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g4434 378 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 2 351 - -
Psa1g4434 378 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 351 IPR027725 -
Psa1g4434 378 Pfam HSF-type DNA-binding 2 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g4434 378 PRINTS Heat shock factor (HSF) domain signature 33 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g4434 378 PRINTS Heat shock factor (HSF) domain signature 46 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g4434 378 SUPERFAMILY "Winged helix" DNA-binding domain 2 84 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4434 Psa-Chr1 345290924 345292507 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4434 17 238 HSF AT4G18880 39.113 4.74e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa1g4434 HSF_DNA-bind 4.2e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4434 K09419 - gmx:100820566 252.292