Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4427 ATGGAATCGAAAAACCCTACTAGGTTCAAGCTTGGGAAACAGTCGTCGTTAGCACCAGAACGAGATAGGGAAGAGGATGAAGTTCATCATGAAGGTGATGCTAGTCTTGATTCTGGAGTTAGGTTGATGTATTCGGCGAATGAAGGTGATGTTGATGGAATTCGTGAGGTGTTGGAATCTGGTGTGAGTGTGAATTTTAGGGATGCTGATGGACGCACTGCTCTTCATATTGCTGCTTGTCAGGGGTTAACTCATGTTGTTGATTTGTTGCTTGAGAAAGGGGCTGATGTTGATCCTAAAGATCGATGGGGGAGCACGCCCCTTGCAGATGCTATATTCTATAAAAACAATGACGTGATCAAACTATTGGAGAATCATGGAGCAAAGCCTCTGATGGCCTCTATGCATGTTAATCACGCACGTGAAGTCCCTGAATATGAAATCGATCCTAAAGAACTTGATTTTACCAACAGTGTGGAGATAACAAAGGGGACTTTCTGTATTGCGTTGTGGCGTGGGACCGAGGTTGCGGTAAAAAAGCTCGGGGATGATGTCATAATTAATGAGGAGAAAGTGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATTCGGCATCCAAATGTAGTCCAATTTCTTGGTGCTGTGACACAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGATTTCATAAAAAGAAAAGGAGCTTTAAAACCAAGTACAGCTGTTAGATTTGCACTTGATATTGCTAGGGGAGTGGGTTATTTGCATGAAAATAAACCATCACCCATTATTCACCGTGATCTCGAGCCTTCTAATATATTGCGGGATGATTCCGGCCACCTAAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTAGCAGTTAAAGAAGACAAGCCTCTAACTTGCCAAGACACTTCTTGCCGCTATGTGGCTCCTGAGGTTTTTAATCAAGAGGAATATGACACTAAAGTGGATGTGTTCTCATTTGCACTAATTCTACAAGAGATGATCGAAGGTTGCCCTCCTTTTTCTGCAAAGCGTGATGACGAGGTTCCTAAGGTTTATGCTTCAAAAGAGAGACCGCCCTTCCGAGCTCCTACTAAGCATTATTCTCATGGAATTCGAGAGTTGATTGAAGAGTGTTGGAATGAAAATCCAGCAAAGAGACCAACATTCAGACAAATAATAACAAGGCTGGAATCCATCTACAATACAATTGGACAAAAAGGACGTTGGAAGGTTAAACCATTGAGGTGCTTTCAGAATCTGGAAGCTTTGTTGAAGAGAGACCGATCGAAATTAAGCAGCCGGGGAAGTTCATCTCGCTCGTCTACTAGCCGTATATGA 1374 0.4287 MESKNPTRFKLGKQSSLAPERDREEDEVHHEGDASLDSGVRLMYSANEGDVDGIREVLESGVSVNFRDADGRTALHIAACQGLTHVVDLLLEKGADVDPKDRWGSTPLADAIFYKNNDVIKLLENHGAKPLMASMHVNHAREVPEYEIDPKELDFTNSVEITKGTFCIALWRGTEVAVKKLGDDVIINEEKVKAFRDELALFQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLRDFIKRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDKPLTCQDTSCRYVAPEVFNQEEYDTKVDVFSFALILQEMIEGCPPFSAKRDDEVPKVYASKERPPFRAPTKHYSHGIRELIEECWNENPAKRPTFRQIITRLESIYNTIGQKGRWKVKPLRCFQNLEALLKRDRSKLSSRGSSSRSSTSRI* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4427 457 SUPERFAMILY Ankyrin repeat 41 132 IPR036770 -
Psa1g4427 457 Gene3D Phosphorylase Kinase; domain 1 147 230 - -
Psa1g4427 457 Gene3D - 5 144 IPR036770 -
Psa1g4427 457 Pfam Protein tyrosine and serine/threonine kinase 173 408 IPR001245 GO:0004672|GO:0006468
Psa1g4427 457 Pfam Ankyrin repeats (3 copies) 42 130 IPR002110 GO:0005515
Psa1g4427 457 PRINTS Tyrosine kinase catalytic domain signature 227 240 IPR001245 GO:0004672|GO:0006468
Psa1g4427 457 PRINTS Tyrosine kinase catalytic domain signature 266 284 IPR001245 GO:0004672|GO:0006468
Psa1g4427 457 PRINTS Tyrosine kinase catalytic domain signature 379 401 IPR001245 GO:0004672|GO:0006468
Psa1g4427 457 PIRSF ILK 1 432 - -
Psa1g4427 457 ProSiteProfiles Ankyrin repeat profile. 70 102 IPR002110 GO:0005515
Psa1g4427 457 ProSiteProfiles Ankyrin repeat region circular profile. 70 102 - -
Psa1g4427 457 ProSiteProfiles Protein kinase domain profile. 120 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g4427 457 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 439 - -
Psa1g4427 457 SMART ANK_2a 103 132 IPR002110 GO:0005515
Psa1g4427 457 SMART ANK_2a 37 66 IPR002110 GO:0005515
Psa1g4427 457 SMART ANK_2a 70 99 IPR002110 GO:0005515
Psa1g4427 457 SUPERFAMILY Protein kinase-like (PK-like) 160 409 IPR011009 -
Psa1g4427 457 MobiDBLite consensus disorder prediction 15 34 - -
Psa1g4427 457 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 439 - -
Psa1g4427 457 CDD STKc_MAP3K-like 161 408 - -
Psa1g4427 457 MobiDBLite consensus disorder prediction 1 34 - -
Psa1g4427 457 Gene3D Transferase(Phosphotransferase) domain 1 231 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4427 Psa-Chr1 344949549 344956763 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4427 8 429 MAP Kinase Kinase Kinase AT4G18950 68.618 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Psa1g4427 PK_Tyr_Ser-Thr 1.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4427 - - gmx:100790126 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4427 1 344949549 344956763 Psa1g4427 1 344949549 344956763 ECH