Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4417 ATGGTGGATGATAATTCAGAAAGCATTGAAGCTCATGAAGTAGTTTTAGATGTAAACAATGGTGCCTCAAAAAACTGTGAAGAGTCTGTCATCAAAGACTCTGTGCCCCTTTTGAAGAAGTTGGTAGCAGAAGTAGTGGGAACATACTTAATGATATTTGCGGGTTGCGCTGCTGTTGTTGTGAACCTAAACAATGATCATGTAGTGACACTTCCTGGAATCGCTTTCGCTTGGGGATTTACCGTTATGGTATTGATTTACTCTCTTGGCCATATCTCTGGTGCTCATTTCAATCCTGCAGTTACTATTGCTCATGCTTCAACTAAAATATTTCCCTTCAAACAGGTGCCAGCTTATATTATAGCTCAAGTCCTTGGATCAACACTAGCTAGTGGAACTCTAAAGCTTATATTTAATGGCAAAGAAGATCAGTTTATTGGAACACTCCCAGCTGGAACTAACCTGCAAGCTTTCATAATCGAGTTCATATGCACTTTCTTCCTTATGTTTGTTATTTCTGGAGTAGCCACCGATAACAGAGCGGTTGGTGAGTTAGCAGGGCTTGCAGTTGGGTCTACAATAATAATAGATATATTATTTGCAGGACCACTCACAGGAGCATCAATGAATCCGGCGAGAAGCTTAGGACCTGCAATTTTGTACCATGAATATACAGGACTATGGATATATTTGATTTCACCCATCCTAGGAGCTTTGACAGGTACATGGACTTACAATTTCATCAGGCACGCCAACAAGCCAATGTGTGATGAGCACACCAAGATTGAGCTTACAAAGATTGTCCCTTTTCTCAGAAGGAGCAGGTCGTAA 831 0.4091 MVDDNSESIEAHEVVLDVNNGASKNCEESVIKDSVPLLKKLVAEVVGTYLMIFAGCAAVVVNLNNDHVVTLPGIAFAWGFTVMVLIYSLGHISGAHFNPAVTIAHASTKIFPFKQVPAYIIAQVLGSTLASGTLKLIFNGKEDQFIGTLPAGTNLQAFIIEFICTFFLMFVISGVATDNRAVGELAGLAVGSTIIIDILFAGPLTGASMNPARSLGPAILYHEYTGLWIYLISPILGALTGTWTYNFIRHANKPMCDEHTKIELTKIVPFLRRSRS* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4417 276 Pfam Major intrinsic protein 34 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4417 276 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 3 257 - -
Psa1g4417 276 TIGRFAM MIP: MIP family channel proteins 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4417 276 PANTHER AQUAPORIN NIP2-1 3 257 IPR034294 -
Psa1g4417 276 SUPERFAMILY Aquaporin-like 35 256 IPR023271 -
Psa1g4417 276 Gene3D Glycerol uptake facilitator protein. 3 262 IPR023271 -
Psa1g4417 276 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4417 276 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Psa1g4417 276 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4417 276 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4417 276 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4417 276 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4417 276 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g4417 276 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4417 Psa-Chr1 344622606 344624057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4417 2 272 Major Intrinsic Protein MIP AT5G37810 50.903 4.99e-92 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4417 K09874 - gmx:100812577 397.127