Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4393 ATGGCACAGAATAGGGAGGTTGATGATCATGGAAGAGACAACAAAACCAACCAAAAAGTTTCATTCTACAAACTCTTCACTTTTGCAGATACTCTTGATGTGAGTTTGATGATCATTGGCATTATCTCTGCCATTGCTAATGGAATGTCACAGCCTATCATGACTCTTATACTTGGCAGAATCATCAACGCCTTTGGTAACACTGATCCACACCATACTCTTAAAGAAGTTTCTAAGGCTTCATTGTTGTTTGTTTACCTCGCTGTTGGAACCGGAGTTGTATCGTTCCTACAGGTATCGTGTTGGATGGTGACAGGAGAAAGACAAGCTGCGAGGATTCGTAGTTTGTACTTGAAGACAATATTGAAACAGGATATTGCGTTTTTCGACACTGAAACGAACACGGGAGAGGTAATCGGTAGAATGTCTGGCGACACAATTCTCATTCAAGATGCAATGGGAGAAAAGGTTGGGAAGTTTACTCAACTTGCTACGTCATTTTTTGGTGGCTTTGTGGTTGCCTTCATAAAAGGATGGAGACTAGCTTTAGTTTTGCTTGCATGTATACCTTGTGTTGTCGTTGTTGGCGGAGTCATGTCTATGCTCATGGCTAAAATGTCGACCCGTGGACAAGCTGCTTATACAGAAGCAGGAAATGTTGTTGATCAAACCGTCGGAGCCATTAGAACAGTTGCATCTTTTACTGGGGAGAAAAAAGCAATAGAAAAGTACAATAGTAGGTTAAAAGTTGCTTATACGAGTACGGTTCAACAAGGAACTGCGACAGGATTTGGGATGGGGTTACTTTCATTGATTGTCTTTAGCACCTATGGACTTGCAATGTGGTATGGTTCCAAATTAGTCCTTGAGAAGGGATACACTGGTGGAACTGTCATGAGTGTAATGATAGCTCTTATGACCGGTGGAATGTCATTGGGTCAGACATCCCCATGCATAGATGCATTTACTGCAGGACAAGCAGCAGCGTATAAAATGTTTGAGACGATTAAAAGAAAGCCGAAAATTGATGCATATGACACGAGTGGAGTTGTCTTGGAGGACATAAAGGGAGATATTGAACTCAAAGATGTTTACTTTCGATACCCTGCAAGGCCAGACGTGCAGATATTTGCTGGATTTTCGCTGTTGGTTCCGAGTGGCACAACTACTGCTTTGGTGGGTCAAAGTGGAAGTGGAAAGTCTACTGTAATCAGTTTATTGGAACGATTCTACGATCCTGATGCTGGTGAAGTACTTATAGATGGTGTGAATTTGAAGAACTTGCAACTTAAATGGATAAGGGGACAGATTGGGTTGGTTAGTCAAGAGCCGATCTTGTTTACTACTACTATCCGAGAGAACATAGCATATGGGAAAGAAGGTGCAACTGATGAGGAGATAACAGCAGCAATAACACTTGCTAATGCCAAAAAGTTCATCGACAAACTGCCTCAGGGCCTTGACACCATGGCGGGACAAAATGGTACTCAACTTTCCGGTGGGCAAAAGCAAAGAATCGCAATTGCAAGAGCAATAATGAAGAACCCGAGAATCCTTCTTCTTGATGAAGCAACAAGTGCATTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCTTTAGAAAAAATTATGTTTAAAAGGACTACGGTTGTTGTTGCGCATCGTTTGACAACTATAAGAAATGCTGACACCATAGCAGTGGTTCATCAGGGCAAAATAGTGGAGGAAGGAGCTCATGATGAGCTAATCAAGGATGTAGATGGTGCTTATTCTCAGCTTATTCGTCTACAAGAAGGAGAAAAAGAAACTCAAAATTTTGAAGCAGATAAGTCAAGTCACATGTTAAATAGTGACATGTCTAGATCTTCCACCCGGAAAAATTCACTTGTCATGTCAATAAGCCAAAGATCATCAGGGAGAATCTCCCAAATTGGTGTAGAAATAGAAGAACCAGATATCGAAGAAGGTCGAGTTGATGAGAATAAGAAGAAGAAACAAAAAAATGTTTCTATAAGACGTTTGGCCTACTTGAACAAACCTGAGATTCCTGTCTTACTGCTCGGATCCATTGCTGCAATAGTGAATGGTGTAGTGTTCCCTGTATTCGGCCTAGTGTTTTCATCAGCCATTAGTATGTTTTATGAACCTCCAGAACAACAGAAGAAAGATGCTAGGCTCTGGTCACTTCTATATGTCGGTTTGGGTGTGATAAGTCTAGTGGTTTTACCGCTTCAGAATTACTTCTTTGGGATTGCAGGTGGAAAACTTGTAGAAAGAATTCGTTCGCTGACATTTGCAAAGGTTGTGCACCAAGAAATAAGTTGGTTTGATGACCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGACTATCGACGGATGCTTCAACGGTTAAAAGTCTTATTGGTGACACGTTGGCTCTTATTGTGCAAAACATATCCACACTCACAGCTGGTCTAGTTGTAGCATTCACTGCTAATTGGATTCTCGCTTTTATAGTTTTGGCTGTGTCACCAATGGTTCTTGTGCAAGGAATCATTCAGATGAAGTTTCTCGAAGGATTCAGTGGAGATGCCAAGGTGATGTATGAACAGGCAAGTCAAGTGGCAAACGACGCTGTTAGTAGCATCAGAACCGTTGCATCATTTTGTGCAGAATCAAAGGTTATGGATATGTATCGGAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCGTTCGGGGCTTGTAAGTGGTGCAGGATTCGGCTTCTCTTTTGTGGCTCTATATTGCATGACTGCTTTTTGTTTCTACATAGGAGCTATTCTAGTGCAGCATGATAAAGCAACTTTTCAAGAGGTTTTCAAGGTTTTCTTCAGTTTAACTATAACAGCAATTGGCATTTCTCAGTCTAGTACTTTGGCACCAGACACTAATAAGGCCAAAGATTCCGCCGCTTCGATATTCGAAATTCTTGACAGTAAACCTACTATTGACTCCAGTAGCAATGAAGGCGAAACATCAGAAACAGTTACGGGTGATATCGAACTTCAACACGTCTGCTTCAATTACCCAACAAGGCCTCATATTCAAATTTTCAAAGATTTATGCCTATATATCCCTGCCGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTTATAAGCCTCTTAGAGCGATTTTATAACCCGGACTCTGGACATGTACTACTCGACGGAGTGGATATCAAGACTTTCAGATTAAGCTGGTTGAGGCAACAGATGGGTTTAGTCGGTCAAGAGCCTATTCTTTTCCACGAAAGCATTCGCGCCAACATAGCTTATGGCAAAGAAGGAGATGCTACAGAAGACGAGATAATTATAGCAGCTAAAGCAGCCAATGCACACAGCTTCATAAGTTCTCTTCCAAATGGTTACGATACATCGGTCGGCGAAAGAGGCACACAACTTTCCGGAGGACAAAAGCAACGTATTGCTATTGCAAGAGCCATGCTGAAAAACCCAAAAATACTTCTGCTTGATGAAGCGACAAGTGCACTCGACGCCGAGTCAGAGCGTATAGTTCAAGAGGCTCTAGACAAAGTGAGTGTCAACAGAACTACTGTGGTGGTGGCTCACCGTCTTACAACGATTCGAGAAGCGGATACTATAGCAGTAATTAAAAATGGAGTGGTTGCAGAAAAGGGAAGACATGATGTGTTGATGAAGATCACTGATGGTGTTTATGCTTCATTAGTAGCTCTTCATTCAAGTGCATCATAA 3753 0.4181 MAQNREVDDHGRDNKTNQKVSFYKLFTFADTLDVSLMIIGIISAIANGMSQPIMTLILGRIINAFGNTDPHHTLKEVSKASLLFVYLAVGTGVVSFLQVSCWMVTGERQAARIRSLYLKTILKQDIAFFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFTQLATSFFGGFVVAFIKGWRLALVLLACIPCVVVVGGVMSMLMAKMSTRGQAAYTEAGNVVDQTVGAIRTVASFTGEKKAIEKYNSRLKVAYTSTVQQGTATGFGMGLLSLIVFSTYGLAMWYGSKLVLEKGYTGGTVMSVMIALMTGGMSLGQTSPCIDAFTAGQAAAYKMFETIKRKPKIDAYDTSGVVLEDIKGDIELKDVYFRYPARPDVQIFAGFSLLVPSGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNLQLKWIRGQIGLVSQEPILFTTTIRENIAYGKEGATDEEITAAITLANAKKFIDKLPQGLDTMAGQNGTQLSGGQKQRIAIARAIMKNPRILLLDEATSALDAESERIVQEALEKIMFKRTTVVVAHRLTTIRNADTIAVVHQGKIVEEGAHDELIKDVDGAYSQLIRLQEGEKETQNFEADKSSHMLNSDMSRSSTRKNSLVMSISQRSSGRISQIGVEIEEPDIEEGRVDENKKKKQKNVSIRRLAYLNKPEIPVLLLGSIAAIVNGVVFPVFGLVFSSAISMFYEPPEQQKKDARLWSLLYVGLGVISLVVLPLQNYFFGIAGGKLVERIRSLTFAKVVHQEISWFDDPANSSGAVGARLSTDASTVKSLIGDTLALIVQNISTLTAGLVVAFTANWILAFIVLAVSPMVLVQGIIQMKFLEGFSGDAKVMYEQASQVANDAVSSIRTVASFCAESKVMDMYRKKCSGPEKQGVRSGLVSGAGFGFSFVALYCMTAFCFYIGAILVQHDKATFQEVFKVFFSLTITAIGISQSSTLAPDTNKAKDSAASIFEILDSKPTIDSSSNEGETSETVTGDIELQHVCFNYPTRPHIQIFKDLCLYIPAGKTVALVGESGSGKSTVISLLERFYNPDSGHVLLDGVDIKTFRLSWLRQQMGLVGQEPILFHESIRANIAYGKEGDATEDEIIIAAKAANAHSFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAESERIVQEALDKVSVNRTTVVVAHRLTTIREADTIAVIKNGVVAEKGRHDVLMKITDGVYASLVALHSSAS* 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4393 1250 Pfam ABC transporter 380 526 IPR003439 GO:0005524
Psa1g4393 1250 Pfam ABC transporter 1026 1175 IPR003439 GO:0005524
Psa1g4393 1250 Gene3D - 357 618 IPR027417 -
Psa1g4393 1250 ProSitePatterns ABC transporters family signature. 498 512 IPR017871 GO:0005524
Psa1g4393 1250 SMART AAA_5 386 572 IPR003593 -
Psa1g4393 1250 SMART AAA_5 1034 1221 IPR003593 -
Psa1g4393 1250 Gene3D - 997 1249 IPR027417 -
Psa1g4393 1250 Gene3D ABC transporter type 1, transmembrane domain 82 981 IPR036640 GO:0005524|GO:0016021
Psa1g4393 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1244 IPR027417 -
Psa1g4393 1250 Pfam ABC transporter transmembrane region 37 309 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g4393 1250 Pfam ABC transporter transmembrane region 686 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g4393 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1007 1244 IPR003439 GO:0005524
Psa1g4393 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 597 IPR027417 -
Psa1g4393 1250 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 14 1247 - -
Psa1g4393 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 972 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g4393 1250 SUPERFAMILY ABC transporter transmembrane region 25 343 IPR036640 GO:0005524|GO:0016021
Psa1g4393 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 332 - -
Psa1g4393 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 595 IPR003439 GO:0005524
Psa1g4393 1250 SUPERFAMILY ABC transporter transmembrane region 672 991 IPR036640 GO:0005524|GO:0016021
Psa1g4393 1250 CDD ABC_MTABC3_MDL1_MDL2 1007 1243 - -
Psa1g4393 1250 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524
Psa1g4393 1250 CDD ABC_MTABC3_MDL1_MDL2 359 597 - -
Psa1g4393 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 324 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g4393 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 990 - -
Psa1g4393 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 14 1247 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4393 Psa-Chr1 343734103 343738779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4393 20 1246 Calmodulin-binding Proteins AT2G36910 45.425 0.0 1063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4393 K05658 - gmx:100801771 1962.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4393 1 343734103 343738779 Psa1g4393 1 343734103 343738779 ECH