Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4392 ATGGCACGCAGCACTGAGGTACATGATAATTCTTCACCACCATCACCATCAACACAAAACCATGAAATCAGAGAAACCAAAACCAACCAAAAAGTTCCATTTTATAAGCTCTTCAATTTCGCGGATCGTCTTGATGTAACATTGATGATCATTGGCACTATCGCTGCCGTGGCTAATGGTTTGTCTCAGCCTCTCATGACTCTTATCTTTGGGAAACTCATCAATGCTTTTGGTGGTTCTGATCCATCAGCCATCGTTAAACAAGTTTCTAAGGTATCATTGTTATTTGTTTACTTAGCTGTTGGGGCTGGAACAGCATCGTTTCTACAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCCGCGAGGATTCGTAGTTTGTACTTGAAAACGATATTGAAACAAGATATTGCGTTCTTTGATACTGAAACAAACACGGGAGAGGTAATTGGTAGAATGTCTGGTGACACAATTCTCATTCAAGATGCAATGGGAGAAAAGGTTGGGAAGTTTGTTCAGCTTGCTTCAAATTTTTTTGGTGGCTTTGTGATCGCATTTATAAAAGGATGGCGTCTAGCTGTAGTTTTACTTGCGTGTATGCCTTGTGTTATTATTGCTGGTGGTTTCATGTCCATGATGATGGCTAAAATGTCAAGCCGCGGACAAGTTGCTTATGCAGAAGCAGGAAATGTTGTTGATCAAACAGTTGGAGCCATCAGAACAGTTGCGTCTTTTACTGGTGAGAAAAAAGCCATAGAGAGGTATAATAGCAAGATAAAAGTTGCTTATACTGCAACGGTTAACCAAGGGATAGTCTCAGGTTTAGGAATGGGAACGCTTCTCTTAATCGTCTTCTGCACTTATGGGCTTGCCATGTGGTATGGTTCCAAACTAGTTATTGAGAAAGGATATAGCGGTGGAAGTGTCATTACTGTGATCATAGCTCTTATGACTGGTGGAATGGCACTAGGTCAGGCATCCCCATGCATAAATGCATTTGCTTCAGGACAAGCAGCAGCATATAAAATGTTTGAGACAATTGAAAGAAAGCCGAAAATTGATGCATATGACACAAGTGGTGTTGTCTTGGAGGACATAAAGGGAGATATTGAACTCAAGGATGTTTACTTTAGATACCCTGCGAGGCCGGACGTGCAGATATTTGCTGGATTTTCGCTGTTTGTTCCAAGTGGCACAACTACTGCTTTGGTGGGTCAAAGTGGAAGTGGAAAGTCTACTGTAATCAGTTTATTGGAACGATTCTATGATCCTGATGCTGGTGAAGTACTTATAGATGGTGTGAATTTGAAGAACTTGCAACTTAAATGGATAAGGGAACAGATTGGGTTGGTTAGTCAAGAGCCTATCTTGTTTACTACTACTATCCGAGAGAACATAGCATATGGGAAAGAAGGTGCAACTGACGAGGAGATAACAGCGGCAATAAAACTTGCTAATGCAAAGAAGTTCATCGACAAACTACCTCAGGGCCTTGACACCATGGCGGGACAAAATGGTACTCAACTTTCTGGCGGTCAAAAGCAAAGAATTGCGATTGCGAGAGCAATATTAAAGAACCCGAGAATCCTGCTTCTTGATGAAGCAACGAGTGCATTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCATTAGAAAAAATCATATTGAAAAGGACTACTGTTGTCGTTGCGCATCGTTTGACAACTATCAGAAATGCTGACACAATAGCAGTGGTTCATCAGGGAAAAATCGTAGAGAAAGGAACTCATCGCGAGTTAACCATGGATGCTTATGGTGCTTACTCTCAACTTATTCGTCTACAAGAAGGAGAAAAAGAAGCTGAAGATAGCAGAACGTCTGAAGCAGATACATCCGGTGACTATTTAAATATAGAAAGTCACATGGCTAGATCTTCCACCCAAAGACACTCTTTTATGAGATCAACAAGCCAAACATCATCAGCAAGTCTTCGGCATTCTCAGTCACGTAGAGGCTTGTCTGGAGAAATAAAGAAAGCAGATATTGAACAAGGTCAACTTGATAATAAGGAAAAACCCAAAAGGGTACCTCTAACGCGTTTGGCCAGGTTGAACAAGCCTGAGGTTCCTGTCATACTGCTTGGAAGCATTGCTGCAATAATACATGGTGTCGTGTTCCCTATATTTGGCCTCTTGTTTTCATCAGTCATTAATATGTTTTTTAAGCCTCCAGAACAGCAGAGGAAAGAGTCCAGGTTATGGTCACTTCTATATGTAGGTTTGGGTTTGGTAACTCTAGTGGTTTTACCACTTCAGAATTACTTCTTTGGGATTGCTGGTGGAAAACTTATTGAAAGAGTTCGTTCATTGACATTTGAAAAGATTGTGCACCAAGAAATTAGATGGTTTGACGATCCTGCAAATTCAAGTGGTGCAGTTGGTGCAAGGTTATCTACCGACGCTTCAACTGTGAAAAGTCTTGTTGGTGACACATTGGCCCTCGTTGTGCAAAACATATCAACGATCACAGCTGGTCTACTTATATCATTCACTGCTAACTGGATTCTTGCTTTTATAGTTTTGGCTGTCTCACCTATGGTTCTTATGCAAGGAGTCGTTCAGATGAAGTTTCTTAGAGGTTTTAGTGCTGATGCCAAGGTGATGTATGAAGAGGCAAGTCAAGTGGCAAATGATGCTGTTAGTAGCATAAGAACCGTTGCATCATTTTGCGCAGAATCAAAAGTGATGGACATGTACCGGAAAAAGTGTTTAGGGCCAGAGAGACAAGGTGCTCGCTTGGGGCTTGTTAGTGGAGCAGGATTTGGTTTCTCCTTTTTTGCTCTATATTGCACAAATGCTTTCACTTTCTATATAGGATCTATTTTAGTGCAACATGGGAAAGCAACGTTTCAGGAGGTTTTCAGGGTTTTCTTTTGTTTAACAATGACAGCAATCTCCGTTTCCCAGTCTAGTGCATTGGCACCAGACGCTAACAAGGCCAGAGATTCCACAGTTTCAATATTTGAAATTCTTGACAGCAAACCTGATATTGATTCCAGCAGCAAGGAGGGTGTAACACAAGGAACGGTAGTTGGTAATATTGAACTTCAACATGTCAGCTTTAACTACCCAACAAGGCCCCATATTCAAATTTTCAAAGATTTAAGCCTAAGCATCCCATCTGCAAAGACTGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTTATAAGCCTTTTAGAGAGATTTTATGACCCTGATTCTGGACATGTGTACCTAGATGGAGTGGATATCAAAAAGTTCAGATTAAGCTGGTTGAGGCAACAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAACGAAAGCATTCGTGCCAACATAGCTTATGGCAAAGAGGGAGGTTCTACCGAGGATGAGATAATTGCAGCAGCTAAAGCAGCCAATGCACATAGCTTCATAAGTTCTCTTCCAAATGGTTATGAAACCTCTGTTGGGGAAAGAGGCACACAGCTTTCTGGTGGACAAAAGCAACGTATTGCTATTGCGAGAGCCATGCTGAAAAACCCAAAAATACTTTTGCTTGATGAGGCGACAAGTGCACTTGATGCCGAGTCAGAGCGTGTAGTTCAAGAGGCTCTAGACAAAGTGAGTGTCAACAGAACTACTGTGGTGGTGGCTCACCGTCTCACGACAATTCGAGGGGCGGATACTATAGCAGTAATTAAAAATGGGGTTGTTGCAGAAAAGGGAAGACATGATGTGTTAATGAAGATTAAGGATGGTGTTTATGCTTCATTAGTAGCTCTTCATTCAAGTGCATCATAA 3816 0.4156 MARSTEVHDNSSPPSPSTQNHEIRETKTNQKVPFYKLFNFADRLDVTLMIIGTIAAVANGLSQPLMTLIFGKLINAFGGSDPSAIVKQVSKVSLLFVYLAVGAGTASFLQVSCWMVTGERQAARIRSLYLKTILKQDIAFFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFVQLASNFFGGFVIAFIKGWRLAVVLLACMPCVIIAGGFMSMMMAKMSSRGQVAYAEAGNVVDQTVGAIRTVASFTGEKKAIERYNSKIKVAYTATVNQGIVSGLGMGTLLLIVFCTYGLAMWYGSKLVIEKGYSGGSVITVIIALMTGGMALGQASPCINAFASGQAAAYKMFETIERKPKIDAYDTSGVVLEDIKGDIELKDVYFRYPARPDVQIFAGFSLFVPSGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNLQLKWIREQIGLVSQEPILFTTTIRENIAYGKEGATDEEITAAIKLANAKKFIDKLPQGLDTMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALEKIILKRTTVVVAHRLTTIRNADTIAVVHQGKIVEKGTHRELTMDAYGAYSQLIRLQEGEKEAEDSRTSEADTSGDYLNIESHMARSSTQRHSFMRSTSQTSSASLRHSQSRRGLSGEIKKADIEQGQLDNKEKPKRVPLTRLARLNKPEVPVILLGSIAAIIHGVVFPIFGLLFSSVINMFFKPPEQQRKESRLWSLLYVGLGLVTLVVLPLQNYFFGIAGGKLIERVRSLTFEKIVHQEIRWFDDPANSSGAVGARLSTDASTVKSLVGDTLALVVQNISTITAGLLISFTANWILAFIVLAVSPMVLMQGVVQMKFLRGFSADAKVMYEEASQVANDAVSSIRTVASFCAESKVMDMYRKKCLGPERQGARLGLVSGAGFGFSFFALYCTNAFTFYIGSILVQHGKATFQEVFRVFFCLTMTAISVSQSSALAPDANKARDSTVSIFEILDSKPDIDSSSKEGVTQGTVVGNIELQHVSFNYPTRPHIQIFKDLSLSIPSAKTVALVGESGSGKSTVISLLERFYDPDSGHVYLDGVDIKKFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGSTEDEIIAAAKAANAHSFISSLPNGYETSVGERGTQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAESERVVQEALDKVSVNRTTVVVAHRLTTIRGADTIAVIKNGVVAEKGRHDVLMKIKDGVYASLVALHSSAS* 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4392 1271 SMART AAA_5 398 584 IPR003593 -
Psa1g4392 1271 SMART AAA_5 1055 1242 IPR003593 -
Psa1g4392 1271 MobiDBLite consensus disorder prediction 637 664 - -
Psa1g4392 1271 ProSitePatterns ABC transporters family signature. 1168 1182 IPR017871 GO:0005524
Psa1g4392 1271 CDD ABC_MTABC3_MDL1_MDL2 1028 1264 - -
Psa1g4392 1271 Pfam ABC transporter 1047 1196 IPR003439 GO:0005524
Psa1g4392 1271 Pfam ABC transporter 392 538 IPR003439 GO:0005524
Psa1g4392 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 609 IPR027417 -
Psa1g4392 1271 MobiDBLite consensus disorder prediction 1 23 - -
Psa1g4392 1271 SUPERFAMILY ABC transporter transmembrane region 36 355 IPR036640 GO:0005524|GO:0016021
Psa1g4392 1271 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 344 - -
Psa1g4392 1271 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g4392 1271 Pfam ABC transporter transmembrane region 707 978 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g4392 1271 Pfam ABC transporter transmembrane region 49 321 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g4392 1271 CDD ABC_MTABC3_MDL1_MDL2 371 609 - -
Psa1g4392 1271 Gene3D ABC transporter type 1, transmembrane domain 95 1002 IPR036640 GO:0005524|GO:0016021
Psa1g4392 1271 MobiDBLite consensus disorder prediction 637 682 - -
Psa1g4392 1271 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524
Psa1g4392 1271 MobiDBLite consensus disorder prediction 1 25 - -
Psa1g4392 1271 MobiDBLite consensus disorder prediction 665 682 - -
Psa1g4392 1271 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 607 IPR003439 GO:0005524
Psa1g4392 1271 Gene3D - 369 622 IPR027417 -
Psa1g4392 1271 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 707 993 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g4392 1271 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1028 1265 IPR003439 GO:0005524
Psa1g4392 1271 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 26 1268 - -
Psa1g4392 1271 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 26 1268 IPR039421 -
Psa1g4392 1271 Gene3D - 1019 1270 IPR027417 -
Psa1g4392 1271 SUPERFAMILY ABC transporter transmembrane region 686 1010 IPR036640 GO:0005524|GO:0016021
Psa1g4392 1271 MobiDBLite consensus disorder prediction 610 629 - -
Psa1g4392 1271 CDD ABC_6TM_Pgp_ABCB1_D2_like 696 1011 - -
Psa1g4392 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1021 1265 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4392 Psa-Chr1 343715715 343721236 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4392 8 1267 Calmodulin-binding Proteins AT2G36910 44.192 0.0 1058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4392 K05658 - gmx:100801771 1941.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4392 1 343715715 343721236 Psa1g4392 1 343715715 343721236 ECH