Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4390 ATGGCAAAGGATACTCATCATGATTACCCTTTTGGAAAGGTTATTTTTGTTGTTCTTTTATTATCAAATATTTCCTTTCAAGTTGCAACATGTGGCTCCATAGTCAAGTTTCTCCCTGGATTCAATGGACCACTTCCTTTTCTGCTTGAAACAGGGTATGTGGGAGTTGGTGAAAAAGAGGATGTGCAAGTGTTTTATTACTTCATTGAATCAGAAAACAATCCAAAGGAAGATCCTCTCATGCTTTGGCTCACTGGTGGACCTGGTTGCTCTGCTTTCTCTGCCCTTGCCATTGAAATCGGTCCAATTGAATTTAAAAAAGAGACATATAATGGGAGCTTGCCAAATCTCATCTCAAGGACACATTCATGGACAAAGGTGAGTAGCATTATTTTTGTAGATTTGCCGGTTTCCACAGGCTTCACATATGCCACAACAGATTCTGGTTCTCAACGAAGCGACTCGATACAAGCTCACCAAGCTTACCAATTTTTTAGAAAGTGGTTGAGAGAGCATCCAAAATTTCAATCAAATGAAATTTACATTAGTGGTGACTCATACTCGGGCATTACTGTTCCAATAATTGTTCAAGAAATTGCACAAGCAAATGAAAAAGGGATCCAACCATGGATAAATCTCCAGGGATACGTGTTAGGGAATCCTATAACAACTAGAAAGGAAAAAAATTATAGAATCCCTTTTGCCAATGGAATGGGACTCATATCTGATGAACTATACGAGTCACTGCAAGAAAATTGTGATGGAGATTATATAAATCGAGAGAATAGAAATGTTTTATGTTCCAAAGATCTCAGTTCATTCGACAAGGCTATTTCAGACATTCAAGAAAGCCATATTTTAGAACCGTTATGTTTGTGGCTTTTTACCGAAAATTCTCCAAGGAGATCTCTTATTAAAAAATTTCACTCCAAAGTGTCGCCCTTAAAATGCCGAAATTATGCATTTAAACTTTTCGAGTATTGGGCCAATGATGATAATGTTCGCAAAGCACTGCACATACGTAAGGGAAGTATTGGAAAATGGCAACGTTGTTCCTATGATATACCTTATAATGGAGACATCCCTAACAGTTATGATTATCATGTAAATCTAAGTGGAAAAGGATATCGTTCACTAATTTACAGTGGTGATCATGACATGACTGTTCCATTCTTGCATACAAAAGCATGGATAAAATCTTTAAACTATTCCATCGTTGAGGATTGGAGACCGTGGTATACAAATGAGCAAGTTGCAGGATACACAAGAACTTACTCGAATAGGATGACATTTGCAACTGTGAAGGGTGGAGGACACACGGCACCTGAATACCTTCCTGAAGAGAGTTTCGCCATGTTTAATAGGTGGATATCTAAAAGATCTTTGTAG 1389 0.378 MAKDTHHDYPFGKVIFVVLLLSNISFQVATCGSIVKFLPGFNGPLPFLLETGYVGVGEKEDVQVFYYFIESENNPKEDPLMLWLTGGPGCSAFSALAIEIGPIEFKKETYNGSLPNLISRTHSWTKVSSIIFVDLPVSTGFTYATTDSGSQRSDSIQAHQAYQFFRKWLREHPKFQSNEIYISGDSYSGITVPIIVQEIAQANEKGIQPWINLQGYVLGNPITTRKEKNYRIPFANGMGLISDELYESLQENCDGDYINRENRNVLCSKDLSSFDKAISDIQESHILEPLCLWLFTENSPRRSLIKKFHSKVSPLKCRNYAFKLFEYWANDDNVRKALHIRKGSIGKWQRCSYDIPYNGDIPNSYDYHVNLSGKGYRSLIYSGDHDMTVPFLHTKAWIKSLNYSIVEDWRPWYTNEQVAGYTRTYSNRMTFATVKGGGHTAPEYLPEESFAMFNRWISKRSL* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4390 462 SUPERFAMILY alpha/beta-Hydrolases 35 460 IPR029058 -
Psa1g4390 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185|GO:0006508
Psa1g4390 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185|GO:0006508
Psa1g4390 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185|GO:0006508
Psa1g4390 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 429 442 IPR001563 GO:0004185|GO:0006508
Psa1g4390 462 Pfam Serine carboxypeptidase 39 458 IPR001563 GO:0004185|GO:0006508
Psa1g4390 462 Gene3D - 316 461 - -
Psa1g4390 462 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 12 461 IPR001563 GO:0004185|GO:0006508
Psa1g4390 462 Gene3D alpha/beta hydrolase 31 297 IPR029058 -
Psa1g4390 462 PANTHER 1-O-ACYLGLUCOSE:ANTHOCYANIN ACYLTRANSFERASE 12 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4390 Psa-Chr1 343655601 343666476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4390 29 58 Calmodulin-binding Proteins AT2G22960 73.333 2.26e-08 52.0