Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4387 ATGCCTAAGCAAATCAACGAGATTAAGGATTTCCTTCTCACCGCCAGAAGGAAGGATGCTAGGTCAGTGAGAATCAAGAGGAGCAAGGATGTGGTTAAGTTCAAGGTCCGTTGTTCCAAGTACCTTTACACACTCTGTGTGTTTGACATTGAGAAAGCCGACAAGTTGAAGCAATCACTTCCTCCAGGTTTGAGTGTTCAAGACCTTTAA 210 0.4381 MPKQINEIKDFLLTARRKDARSVRIKRSKDVVKFKVRCSKYLYTLCVFDIEKADKLKQSLPPGLSVQDL* 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4387 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
Psa1g4387 69 Pfam Ribosomal L38e protein family 2 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
Psa1g4387 69 Gene3D - 1 69 IPR038464 -
Psa1g4387 69 PANTHER - 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4387 Psa-Chr1 343606302 343607473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4387 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 92.754 1.24e-42 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4387 K02923 - thj:109116186 134.806