Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4386 ATGAGACTCTCTTCAGCTGGTTTTAGTCCTCCACCACCCCAAGAAGGGGAAAAGAGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTCTCTTTGCCAGCAATTGGAAGTAGAGTTGTGTACTTTCCCCAAGGTCACAGTGAACAGGTGGCTGTGTCAACCAACAAGGAAGTGGATGCTCATATTCCAAACTATCCAAGCTTACCTCCTCAGCTTGTTTGTCAACTTCATAATTTGACTATGCATGCTGATGTGGAGACCGATGAAGTGTATGCGCAGATGACTCTGCAACCACTGAATGCTCAAGAGCAAAAAGAGGCTTATCATCCAGCTGAGTTGGGAACTCCGAGTAAACAGCCAACAAACTACTTCTGCAAGACCTTGACTGCCAGTGACACAAGCACTCACGGGGGATTCTCAGTGCCTCGTCGCGCGGCTGAAAAAGTGTTTCCTCCATTGGACTTTTCCCAACAGCCTCCCGCTCAAGAGTTAATAGCAAGGGATTTGCATGGCAACGAATGGAAATTCAGACATATATTCCGGGGGCAGCCGAAAAGGCATCTACTTACGACCGGATGGAGCGTTTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAACGAAAAGAACCAATTGCTTCTTGGCATACGCCGTGCCAGCCGGCCACAAACGGTGATGCCTTCATCGGTGTTGTCAAGTGATAGTATGCACTTGGGACTTCTCGCTGCAGCAGCGCATGCGGCTGCAACCAATAGTCGTTTCACTATTTTCTATAACCCACGTGCTTGCCCGTCGGAATTTGTCATACCCTTAACAAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTGTTTGAAACAGAGGAGTCTAGTGTGCGGCGATACATGGGTACAATAACTGGCATCAGTGACTTAGATTCTGTTCGGTGGCAAAACTCACATTGGCGCTCAGTAAAGGTTGGATGGGATGAATCCACTGCCGGAGAAAGGCAACCGAGAGTATCTTTGTGGGAAATTGAGCCATTGACAACATTTCCTATGTATCCATCTCCGTTTCCCCTTAGGCTTAAACGACCGTGGCCTTCTGGTTTGCCTTCATTCCATGGCATGAAAGATGACGATTTTGGCATGAATTCTCCTTTGTTATGGCTTCGAGACAACGATAGAGGGCTTCAATCTCTTAATTTTCAAGGGATTGGGGTTAACCCTTGGATGCAGCCGAGATTTGATCCTTCCATGCTGAATATGCAAACGGATATGTATCAATCTGTGGCTGCTGCTGCACTTCAAGACATTAGGAGTGTCGATCCTTCCAAACAGCATCCTGGTTCCTTACTTCAATTTCAGCAACCGTCAAACTTCCCGAACAGGACTGCTGCTTTAATGCAGGCACATATGTTGCAACAGTCACAATCTCAACAAGCTTTTCAAAATAATCATGACAATCAGAATCTGTCGCAATCTCAGCAACAAACTCCGACTCATACTCATACTCATACTCAACAGCATCTGCAGCACCAGCACTCATTCAATAATCAGCTCCATCATCATAATCAGCAGCACCAACAACAAACTCAACAGCAAGTGGTGGATAATCAGCAGATTTCCGGTTCGATCTCTACAATGTCGCAGTTTATTTCAGCGCCTCAACCGCAATCACCACCACCTATGCAAGCCCTCCCTTCACTATGTCATCAACAGAGTTTTTCTGATTCAAATGTAAACTCTTCGACTACTATTGTTTCTCCTTTGCACAGTATCATGGGTTCGTTTCCGCAGGATGAAACATCCCATCTTCTAAGTCTTCCTAGAACAAGCTCGTGGGTTCCTGTTCAAAACTCAACCGGTTGGCCCTCGAAGCGTGTTGCAGTAGATCCACTCCTTTCTTCGGGAGCTTCTCAATGTATTATGCCCCAGGTGGAACAGGTAGGGCAGCCACAGAATACCATGTCTCAAAATGCTATTACGTTGCCGCCGTTTCCCGGTAGGGAGTGCTCGATAGACCAAGAAGGGAACAATGATCTGCAAAGTAATCTTTTATTTGGTGTCAATATTGATCCGTCGTCTCTTCTAATGCATAATAGGATGTCGAACTTTAAGGGGATTAATGGAAACAACAGTGACTCCTCAACCATGCCCTATCATCAATCTTCTAATTACATGAACACCGCAGGCAATGATTCTTCGTTGAATCATGGAATAACGCCTAGTATTGGTGAATCTTGTTTCTTGCAAAACCTTGAAAATGGGGAGCAAGGAAACAACCCACTGAACAAGACCTTTGTGAAGGTTTATAAAGCAGGATCCTTCGGAAGATCATTGGATATCACTAAGTTCAGCAGCTACCATGAGCTGCGTAGTGAGCTCGCCCGAATGTTTGGACTAGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCTTGGCCGGAATTCGTGAATAGTGTATGGTGCATCAAGATACTTTCGCCCGAGGAAGTGCAGCAAATGGGCAACACTGGCCTCGGGCTTTTAAACTCGGTTCCAATTCAAAGGCTCTCAAGTAGCATCTGCGATGACTATGTGAGCCGTCAAGATCCAAGAAATCTAAGCAGTGGAATAACAACCGTCGGATCTCTAGACTACTAA 2733 0.4596 MRLSSAGFSPPPPQEGEKRVLDSELWHACAGPLVSLPAIGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLVCQLHNLTMHADVETDEVYAQMTLQPLNAQEQKEAYHPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFHGMKDDDFGMNSPLLWLRDNDRGLQSLNFQGIGVNPWMQPRFDPSMLNMQTDMYQSVAAAALQDIRSVDPSKQHPGSLLQFQQPSNFPNRTAALMQAHMLQQSQSQQAFQNNHDNQNLSQSQQQTPTHTHTHTQQHLQHQHSFNNQLHHHNQQHQQQTQQQVVDNQQISGSISTMSQFISAPQPQSPPPMQALPSLCHQQSFSDSNVNSSTTIVSPLHSIMGSFPQDETSHLLSLPRTSSWVPVQNSTGWPSKRVAVDPLLSSGASQCIMPQVEQVGQPQNTMSQNAITLPPFPGRECSIDQEGNNDLQSNLLFGVNIDPSSLLMHNRMSNFKGINGNNSDSSTMPYHQSSNYMNTAGNDSSLNHGITPSIGESCFLQNLENGEQGNNPLNKTFVKVYKAGSFGRSLDITKFSSYHELRSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQQMGNTGLGLLNSVPIQRLSSSICDDYVSRQDPRNLSSGITTVGSLDY* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4386 910 Gene3D - 774 866 - -
Psa1g4386 910 ProSiteProfiles PB1 domain profile. 777 861 IPR000270 GO:0005515
Psa1g4386 910 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Psa1g4386 910 MobiDBLite consensus disorder prediction 484 526 - -
Psa1g4386 910 Gene3D - 126 229 IPR015300 -
Psa1g4386 910 Pfam AUX/IAA family 769 862 IPR033389 -
Psa1g4386 910 CDD B3_DNA 127 228 IPR003340 GO:0003677
Psa1g4386 910 SUPERFAMILY CAD & PB1 domains 776 852 - -
Psa1g4386 910 PANTHER AUXIN RESPONSE FACTOR 1 890 - -
Psa1g4386 910 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa1g4386 910 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 890 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa1g4386 910 Gene3D - 292 364 - -
Psa1g4386 910 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Psa1g4386 910 SMART B3_2 128 230 IPR003340 GO:0003677
Psa1g4386 910 SUPERFAMILY DNA-binding pseudobarrel domain 113 257 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4386 Psa-Chr1 343594301 343600399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4386 1 484 B3 DNA Binding Superfamily AT1G30330 85.246 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa1g4386 AUX_IAA 5.4e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4386 - - gmx:100798719 1492.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4386 1 343594301 343600399 Psa1g4386 1 343594301 343600399 ECH