Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4349 ATGCCATTTTCGAGAGTGAAAGCCTTCTTCCAGAGGTTCTGGTTGGACGAAATGGAAATGGGAAGTTATACACATAGCAGCTTTTTGTCTAGTGATCTTTTACCGTCTCTCGGCGCACAAATAAACCAGGAAACTATACTCCGAAAATACATAATCTATCCGTTCAATCCTAAGTATAGGGTTTGGGAGTTGTTGCTGGTTGTTTTAGTCATATACTCAGCTTGGATATGCCCCTTTGAGTTCGCCTTTCTGACTTATAAGCGAGATCGACTATTCATCATAGACAACATTGTCAATGGCTTCTTCGCCATCGACATTGTGCTTACATTCTTCGTTGCATACCACGATAGCCATTCGTATCTTCTCATTGATGATCCAAAGAAAATTGCAATCAGTTACTTATCCACCTGGTTTGCTTTGGATATCTGCTCCACGGCGCCACTCGAGACCATTAGCCTCCTCTTCACTAATTATAACAGTGAGCTTGGTTTCAAACTTCTTAACATGTTGCGATTATGGCGCCTGAGACGAGTCAGTTCTCTGTTTGCAAGACTCGAAAAGGACATTCGCTTCAACTACTTCTGGGTTAGGTGCACAAAGCTCACTGCTGTAACCTTGTTTGCAGTGCACTGTGCAGGATGCGTTAACTATCTCATTGCAGATAGGTACCCTGATTCCAAGAGAACTTGGATAGGTGCTATGTTCCCGAATTTTAAACAAGAGAGTCTTTGGGACCGATATGTAACTTCGATATACTGGTCCATTGTCACACTTACTACGACTGGCTATGGAGACTTACACGCAGAGAACACCATAGAGATGCTGTTTGATATCACTTATATGTTGTTCAACCTGGGTTTAACATCATACATAATTGGAAACATGACTAACCTTGTAGTTCACTGGACCAGTCGCACCCGAAATTTTAGAGATACCGTCAAAGCAGCTTCGGAGTTTGCTTCGAGAAACCATTTGCCACATCGCGTACACAATCAAATGTTGGCACACATATGTTTGCGGTTTAAAACAGAAGGACTGAAGCAGCAAGAAGCGTTAAATGATCTTCCAAAGGCAATTCGTTCAAGCATAGCACACCATCTGTATTTTCCTGCCATGCAGAAGGTTTACCTCTTCCAAGGAGTCTCTCATGATTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCGGAATATTTTCCACCGACCGAAGATGTGATACTGCAAAACGAGTCTCCAACGGACCTTTATATACTGGTTACAGGAGCAGTGAATTTCGTTCACTACAATGATGGGAATGATCAAGTGGTTCTTGGCAAGGCAAGTGCAGTAGATACATTCGGAGAGTTCGGAGTTTTGTATCATGTACTCCAGCCTTTCACCGTTCGTACCACGGAACTTTCTCAGATTTTAAGAGTCAACAAAACATCCTTAATGAATGTTTTACAAGCAAATCCAGGAGATGCACAGATTATAATGGATAACCTTTTAACGAGATTAAAGGGGCATGAAGGATTCGGCTTTGAATATCCACATACAGATCATGGACTGGTTCTACATGAACTGCTTCATGGAGGTAACACAGTAGAATGCGCTTCTCACGGGTGTACAAATAATTCATATGGCTGTTCATTAATGCACGAAGGAGAGCACATAAATATCAGAGACTCACAGAATAATAACATGATACCTGAGGATGGCAAAAGTGATCTCCATGCTGCTGTGCTGCCTCTGCATAAGGGGAAACTAGACATTGTTGAAATTCTGCTTGAAAGAGATGCAAAAGCAAAGAACCCGAATAACATAGGGTGGACACAGAAAGCTCTAGTACAACAGTTAAAAAACAAGAGCGTTTCTGATCATACGATGAATTGTGAAAGTGGGAAGAAATTGGATGAACATAGAATAGAGATTATTGAGCCACAAATTCTTAAACTGGGCGGGAATGGCTCAACCAGAAACAGTAAACAGGATGGTATTAGAACTATTAACTCCCCATTGGAGAAAGTATACACAAACTCCAATTCAAGAAATTCCAATTGTCAGGGAGAAATAGAAATGGCAAGGTTCACCAAGAAGAGGGTAACAATCCATTCACCAAGTGGATGGAGAAGTAGCTCGCATGAACAACACGGAAAACTGATAATCTTACCTGATTCATTAGAAGAGTTGCTCAAAATTGCTGGTGAAAAATTTGGCGGCTTCAAAGCCATAAAAGTAATTAATAAAGAGAATGCAGAGATAGACGACATTGATGTCATTCGAGATGGTGACCATCTCTTTCTTCTAGGCGGCGATAGTGACAATTTGAGTACATGA 2313 0.4125 MPFSRVKAFFQRFWLDEMEMGSYTHSSFLSSDLLPSLGAQINQETILRKYIIYPFNPKYRVWELLLVVLVIYSAWICPFEFAFLTYKRDRLFIIDNIVNGFFAIDIVLTFFVAYHDSHSYLLIDDPKKIAISYLSTWFALDICSTAPLETISLLFTNYNSELGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWVRCTKLTAVTLFAVHCAGCVNYLIADRYPDSKRTWIGAMFPNFKQESLWDRYVTSIYWSIVTLTTTGYGDLHAENTIEMLFDITYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVKAASEFASRNHLPHRVHNQMLAHICLRFKTEGLKQQEALNDLPKAIRSSIAHHLYFPAMQKVYLFQGVSHDFLFQLVSEMEAEYFPPTEDVILQNESPTDLYILVTGAVNFVHYNDGNDQVVLGKASAVDTFGEFGVLYHVLQPFTVRTTELSQILRVNKTSLMNVLQANPGDAQIIMDNLLTRLKGHEGFGFEYPHTDHGLVLHELLHGGNTVECASHGCTNNSYGCSLMHEGEHINIRDSQNNNMIPEDGKSDLHAAVLPLHKGKLDIVEILLERDAKAKNPNNIGWTQKALVQQLKNKSVSDHTMNCESGKKLDEHRIEIIEPQILKLGGNGSTRNSKQDGIRTINSPLEKVYTNSNSRNSNCQGEIEMARFTKKRVTIHSPSGWRSSSHEQHGKLIILPDSLEELLKIAGEKFGGFKAIKVINKENAEIDDIDVIRDGDHLFLLGGDSDNLST* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4349 770 SMART cnmp_10 377 495 IPR000595 -
Psa1g4349 770 SUPERFAMILY cAMP-binding domain-like 304 498 IPR018490 -
Psa1g4349 770 ProSiteProfiles cAMP/cGMP binding motif profile. 377 497 IPR000595 -
Psa1g4349 770 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 769 - -
Psa1g4349 770 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g4349 770 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g4349 770 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g4349 770 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g4349 770 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa1g4349 770 CDD CAP_ED 377 491 IPR000595 -
Psa1g4349 770 PANTHER POTASSIUM CHANNEL AKT1 1 769 IPR045319 GO:0005249|GO:0006813
Psa1g4349 770 Gene3D - 60 300 - -
Psa1g4349 770 Pfam Cyclic nucleotide-binding domain 397 482 IPR000595 -
Psa1g4349 770 ProSiteProfiles KHA domain profile. 692 770 IPR021789 -
Psa1g4349 770 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Psa1g4349 770 Pfam KHA, dimerisation domain of potassium ion channel 691 760 IPR021789 -
Psa1g4349 770 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Psa1g4349 770 Gene3D Jelly Rolls 370 502 IPR014710 -
Psa1g4349 770 Gene3D Helix hairpin bin 301 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4349 Psa-Chr1 342149816 342153403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4349 1 761 Ion Channels AT4G18290 57.050 0.0 824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4349 K21867 - gmx:100811356 1141.72