Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4345 ATGGCTACCACCAACCCAGCCCCGCCACGACAACTCTCCCAGAAAGAAGCCGACATCCAGATGATGTTAGCCGCCGATGTCCATCTCGGTACAAAGAATTGTGATTTCCAAATGGAGAGATATATTTTCAAGCGCCGCAATGACGGTATTTACATTATTAATCTCGGAAAGACATGGGAGAAGCTTCAACTTGCAGCTAGGGTTATTGTTGCAACTGAAAACCCTCAGGACATAATTGTTCAATCTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTATACTGGTGCTCATGCTATTGCTGGTAGACACACTCCCGGTACATTCACCAATCAGCTTCAAACTTCATTCAGTGAGCCTCGGCTTCTCATTCTCACTGACCCAAGAACCGATCACCAGCCAATCAAGGAAGCTGCTCTTGGAAATATTCCCACAATTGCTTTTTGTGACACTGATTCTCCCATGAGATATGTTGATATTGGAATTCCTGCCAACAACAAGGGAAAGCATAGCATAGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTGTTGCAGATGCGTGGTACTATTCGCCCTGGCCTTAAGTGGGATGTCATGGTGGATCTATTCTTCTACAGAGAACCAGAAGAGGCCAAGGAGCAAGAAGAAGATGAAGTTCTTGCTCCAGATTATGCCATTGCCGATTTCAATGCAGCTTCTATTCCCAATGACGGACAATGGCCTGCTGCCATTGATCAACCATGGAATGATGCCGCTCCACAACCCATTCCAGCAGTTCCTGCTGTAAACTGGACAGCCCCAGAAGCTGTTGCAGGGGACTGGGGTGAAGCTGTTCCTCCACCACAACAAACAGCTGCTCCCGTAGTTGAATCTATCCAAGCAACTGGCTGGGAATAA 906 0.4691 MATTNPAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVATENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDEVLAPDYAIADFNAASIPNDGQWPAAIDQPWNDAAPQPIPAVPAVNWTAPEAVAGDWGEAVPPPQQTAAPVVESIQATGWE* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4345 301 CDD RPS2 22 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4345 301 Gene3D - 18 222 - -
Psa1g4345 301 PRINTS Ribosomal protein S2 signature 19 37 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4345 301 PRINTS Ribosomal protein S2 signature 49 58 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4345 301 PRINTS Ribosomal protein S2 signature 98 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4345 301 PRINTS Ribosomal protein S2 signature 123 140 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4345 301 PRINTS Ribosomal protein S2 signature 140 151 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4345 301 PRINTS Ribosomal protein S2 signature 161 175 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4345 301 Pfam Ribosomal protein S2 22 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4345 301 Pfam Ribosomal protein S2 121 186 IPR001865 GO:0003735|GO:0005840|GO:0006412
Psa1g4345 301 Hamap 40S ribosomal protein SA [rps-0]. 6 280 IPR027498 GO:0003735|GO:0006412|GO:0015935
Psa1g4345 301 SUPERFAMILY Ribosomal protein S2 14 204 IPR023591 -
Psa1g4345 301 MobiDBLite consensus disorder prediction 281 301 - -
Psa1g4345 301 PANTHER 40S RIBOSOMAL PROTEIN SA 7 286 IPR005707 GO:0003735|GO:0006412|GO:0015935
Psa1g4345 301 ProSitePatterns Ribosomal protein S2 signature 2. 123 147 IPR018130 GO:0003735|GO:0005840|GO:0006412
Psa1g4345 301 PANTHER 40S RIBOSOMAL PROTEIN SA 7 286 - -
Psa1g4345 301 TIGRFAM uS2_euk_arch: ribosomal protein uS2 14 210 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4345 Psa-Chr1 341995706 341999240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4345 10 301 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.297 2.80e-149 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4345 K02998 - gmx:100805318 522.316