Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4338 ATGGACCACTATCCCCGGTCCACTGAGCCTTCTCGCTCTGATCCGTCGCCGGAATGGACCGGACCCGACCCCCAAACCGGTCTCGAAGAACCTATGTGGCAATTGGGGCTTGGTGCTGGAGAGGATTCGTATCCACTACGACCTGATGAAGCTGATTGCACTTACTATTTGAGAACAGGTTTCTGTGGCTTTGGTTCTAGGTGTCGGTTCAACCATCCTCCTGACCGTAGCGCGGTTATTGGAGCTGCTTCTAGGACTGTAGGGGAGTATCCAGAACGTGCAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAAGATCTTGCAAATTTGGTGCTTCTTGCAAGTACCATCATCCTAGACAGGCAGGAGGCACTGAGGCTAGTCCTGTGTCGCTAAATTATTATGGATATCCACTACGTCCGGGTGAAAAGGAGTGTTCCTATTTTGTAAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTTGATCATCCTGTTCCTGCCGGTGTCCAAATTCCAGCTCCATCACCTATTCCCCCAGTTTCACCTTTACATATACAAGTACCTACCCCAATATATCCAACCGTACAGCCTCCATCTGGTCCTTCATCACAACAAATTGGTGTACTGGTCGCTAGGCCACCTCTACTACCCGGTTCGTTTGTCCAGAGCCCTTATGGACCTGTAGTATTGTCCCCAACCATGGTCCCCTTTTCTGGCTGGGGTCCTTATCAGGCTACTGCAACGAGCCCTGTACTTCCTTCTGGTAATCCTGCTAATGTTGGTTCCACACAGCTCTATGGCATAACCCAGCTACCTTCACCAGGTAATGCCTATACTGGACCTTATCAACCTTCTGCTTCCTCAGTTGGTCCTTCAAGCAGAGGTCATACGGAGCAGTCATTTCCAGCCAGGCCTAATCATCAAGAGTATCATTATTACTCTAAACCAGAGGATCTTCCATTTGGTCCATCATATAGGTATAACCAACCTCTAGACATGAGTGCACAAAAAGGGAATGTTGTCCTTGGTCCTGCAGGTCTTCCTTTACGCCCGGGGGCAGCACCTTGCACTCATTACACACAGCGTGGTATATGCAAATTTGGCCCCACATGCAAATTTGATCATCCTATTGCATCACTGAGTTACAGTCCATCTGCTTCTTCCCTGACTGATGTGCCAGTTGCGCCGCACTTTGTGGGTTCATCTGTTGGTACTCTTGTTCCTTCATCTTCTTCATCAGAATTGCAGCCTGAACTTACCGCAGGATCCAGCAGAGAGTCTGTTCCATCCAGAATATCTTCATCAGCGAGCACTACGACTGGATCAGTTGGCTTGAATTTGTCAACTGCTGGCCATGTTTCTCAATCCAGCACGCGGAGTTCTAGTCCTTTACCAGCTGCCAATACCACAAGTAGTAATGTCTCTCACACCTCAAGTTAA 1446 0.4848 MDHYPRSTEPSRSDPSPEWTGPDPQTGLEEPMWQLGLGAGEDSYPLRPDEADCTYYLRTGFCGFGSRCRFNHPPDRSAVIGAASRTVGEYPERAGQPVCQYYMRTRSCKFGASCKYHHPRQAGGTEASPVSLNYYGYPLRPGEKECSYFVKTGQCKFGATCKFDHPVPAGVQIPAPSPIPPVSPLHIQVPTPIYPTVQPPSGPSSQQIGVLVARPPLLPGSFVQSPYGPVVLSPTMVPFSGWGPYQATATSPVLPSGNPANVGSTQLYGITQLPSPGNAYTGPYQPSASSVGPSSRGHTEQSFPARPNHQEYHYYSKPEDLPFGPSYRYNQPLDMSAQKGNVVLGPAGLPLRPGAAPCTHYTQRGICKFGPTCKFDHPIASLSYSPSASSLTDVPVAPHFVGSSVGTLVPSSSSSELQPELTAGSSRESVPSRISSSASTTTGSVGLNLSTAGHVSQSSTRSSSPLPAANTTSSNVSHTSS* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4338 481 Gene3D - 43 121 - -
Psa1g4338 481 MobiDBLite consensus disorder prediction 1 35 - -
Psa1g4338 481 Gene3D - 122 173 - -
Psa1g4338 481 PANTHER PROTEIN PHOSPHATASE RELATED 1 471 - -
Psa1g4338 481 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Psa1g4338 481 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Psa1g4338 481 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 471 - -
Psa1g4338 481 ProSiteProfiles Zinc finger C3H1-type profile. 352 380 IPR000571 GO:0046872
Psa1g4338 481 SUPERFAMILY CCCH zinc finger 142 167 IPR036855 GO:0046872
Psa1g4338 481 MobiDBLite consensus disorder prediction 284 303 - -
Psa1g4338 481 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Psa1g4338 481 SUPERFAMILY CCCH zinc finger 50 75 IPR036855 GO:0046872
Psa1g4338 481 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Psa1g4338 481 SMART c3hfinal6 352 379 IPR000571 GO:0046872
Psa1g4338 481 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Psa1g4338 481 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Psa1g4338 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 166 IPR000571 GO:0046872
Psa1g4338 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Psa1g4338 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 355 378 IPR000571 GO:0046872
Psa1g4338 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Psa1g4338 481 SUPERFAMILY CCCH zinc finger 355 382 IPR036855 GO:0046872
Psa1g4338 481 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Psa1g4338 481 MobiDBLite consensus disorder prediction 411 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4338 Psa-Chr1 341685819 341692877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4338 9 468 C2H2 Transcription Factor Family AT5G18550 52.878 4.59e-137 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa1g4338 zf-CCCH 1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4338 - - gmx:100812433 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0656 4 41838430 41842315 Psa1g4338 1 341685819 341692877 PCT