Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4337 ATGTCCACTTCTAGAACCTCGTCAAACACTTCCCTCACAGGACATGATCATCATCACAATCAAACTCAAATTAATCTATCTCTTCTTCAACGGAACACGTCGGTTTACGGCGATAAAAGAGGAAGAAGAAAACAAGTAGAACCGGATAGGTTTCTTGGTGTAAGGAGAAGACCTTGGGGTAGATACGCAGCTGAAATCAGAGATCCTAATACTAAAGAAAGACATTGGTTAGGAACTTTTGATACTGCTCAAGAAGCTGCTTTTGCTTATGATAGAGCTGCTCTTTCCATCAAAGGTAGCAATGCTAAAACAAATTTCATATATTCAACTTCTTCTCAGTCTCATGAAACCAGTCTTCACAATGTTGTTACTCCTTTAGATCCTCAAAAAACACAACCAGTTACCAACCAAACTAGCCTCTCTCAGCTAGATGATGATTCTCATTTGAACAATGAAAACTTGTTCTTCTCTGATGATTCTGCTAACTCGGGCTATCTCGAATGCATTGTTCCGGTTAACTGTTTCAAACCTATTTCAAATACCAACAATTCAAACTTTGATCATAAGAGTAATGCAAGTGGTTCAACTGAACATCACCAAAATGTTGTTGATTCCATTAGTGCAACAAATTTCATGCAGGGTCAATCATTTTATGACTACAATGCATTCTCTCAAGAAGCATTCAACATTGACGACACAAGTGAAAGTAGTGAAGGATTACGGGATTGCAATTACAATGAACTATCAGCTATTTTTAACACACCATTGAGTAATGAAAGTCCAAACTATGAACTAATGAATAGTCATGATGCTTCTTCAACTAGCTATTCTTATCCATCCTATTCATCTTTCGGCGACATTGACATGGAATACTCGCTCTTCTGA 885 0.3751 MSTSRTSSNTSLTGHDHHHNQTQINLSLLQRNTSVYGDKRGRRKQVEPDRFLGVRRRPWGRYAAEIRDPNTKERHWLGTFDTAQEAAFAYDRAALSIKGSNAKTNFIYSTSSQSHETSLHNVVTPLDPQKTQPVTNQTSLSQLDDDSHLNNENLFFSDDSANSGYLECIVPVNCFKPISNTNNSNFDHKSNASGSTEHHQNVVDSISATNFMQGQSFYDYNAFSQEAFNIDDTSESSEGLRDCNYNELSAIFNTPLSNESPNYELMNSHDASSTSYSYPSYSSFGDIDMEYSLF* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4337 294 MobiDBLite consensus disorder prediction 1 24 - -
Psa1g4337 294 Pfam AP2 domain 53 99 IPR001471 GO:0003700|GO:0006355
Psa1g4337 294 SUPERFAMILY DNA-binding domain 51 108 IPR016177 GO:0003677
Psa1g4337 294 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Psa1g4337 294 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 294 - -
Psa1g4337 294 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Psa1g4337 294 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Psa1g4337 294 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Psa1g4337 294 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 294 - -
Psa1g4337 294 CDD AP2 50 106 IPR001471 GO:0003700|GO:0006355
Psa1g4337 294 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4337 Psa-Chr1 341684073 341685659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4337 21 124 AP2-EREBP Transcription Factor Family AT5G18560 61.607 4.30e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa1g4337 AP2 1.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4337 - - mtr:MTR_2g019750 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0660 4 42081157 42082767 Psa1g4337 1 341684073 341685659 PCT