Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4334 ATGAAGAGGAATTGCAACTTGGAACTCTGCCTTTATCCTCCATATGTGTCTGATAGAAATCACATGGTTGAAGAAGAAGATAATGATCTGAGCTCAATGCAAAATCAACAACAACAGCCGCTAACCATTTTCTACGATGGCAAGATGTGTGTTATTGATGTTACGGAGTTTCAGGCCAAATCCATCCTATTGCTGGCAAATAAAAAGGTGCAAGAAATAGTTAAGACACCAACAGGGTCAGAGCCATCGACACCAGCAATAGTAGAATCTCCACATCAATTGTATAGTCCTCCTGGTCCTGCTCTTTCAATGAAAATGTCTTTGCAACGGTTTCTACAAAAGAGAAAAAATAGGATCCAACAAGCTTCTCCATATAATCATTAG 384 0.3932 MKRNCNLELCLYPPYVSDRNHMVEEEDNDLSSMQNQQQQPLTIFYDGKMCVIDVTEFQAKSILLLANKKVQEIVKTPTGSEPSTPAIVESPHQLYSPPGPALSMKMSLQRFLQKRKNRIQQASPYNH* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4334 127 SMART tify_2 34 68 IPR010399 -
Psa1g4334 127 ProSiteProfiles Tify domain profile. 34 68 IPR010399 -
Psa1g4334 127 PANTHER - 1 127 - -
Psa1g4334 127 Pfam Jas motif 105 125 IPR018467 -
Psa1g4334 127 Pfam tify domain 36 67 IPR010399 -
Psa1g4334 127 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 127 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4334 Psa-Chr1 341545624 341547435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4334 1 126 Tify Gene Family AT1G30135 42.308 3.79e-23 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Psa1g4334 tify 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4334 - - gmx:100803886 164.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4334 1 341545624 341547435 Psa1g4334 1 341545624 341547435 ECH