Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4310 ATGGCTTTCAAGCCGGCGGTTTGGTATTGTCGGCCGGTTGAAAATGGAGTGTGGACAAGAACAGTTCAGAATGCCTTTGGTGCTTACACTCCATGTGCGGTTAACAATTTGGTGATTGGTATTTCTCATTTGGTAATTTTAGGCTTGTGTATCTACCGCATATGGTTGATTAAGAAGGATTCCAAAGTCAAGAGGTTTTGTTTAAGGTCAAATATCTACAATTATGTTCTGGGGATTTTGGCTGCGTATTCTGTGGCTGAACCTTTATACAGATTGATCATGGGAGTATCGGTTCTAAATTTAGATGGGCAGTCTCAACTTGCTCCATTTGAGATAACTTCACTGATTGTTGAGGCTTTTGCCTGGTGCTCTATGCTGATTTTGCTTGGGATTGAAACTAAAGTCTACATCTATGAATTCCGATGGTTTGTCCGATTTGGTTTGATTTATGCTATTGTAGGAGAGGCTGTTATGTTCAATTTCGTCATTTCTGTCCAGCAACTTTATAGCAGATCGGTGTTATATTTGTACATCAGTGAGGTGATCTGCCAGGTTTTGTTTGGAGTACTTTTGCTTGTGTATGTCCCTACTTTGGATCCTTATCCGGGTTATACCCCCATTGGTACTGAAGTTGATGCTGATGCTGATGCTGCATATGAAGAACTCCCTGAAGGAGAGCTGATATGTCCTGAAAGGCGAGCTAGCCTATTGTCAAGGATACTTTTTTCTTGGATGAATCCCATTATGAAACTAGGATATGAAAGGCCACTGACAGAGAAAGATATATGGAAATTAGATACGTGGGAGCGGACAGAGGAATTGAATAACAAATTCCAGAAATGTTGGGCCAAGGAGTCTCAGAAACCAAAACCTTGGCTTTTGAAAGCATTAAATGCAAGCCTTGGAGGAAGGTTTTGGTGGGGAGGCATTTTCAAGATTGGCAATGATCTTTCCCAATTTACGGGCCCACTTATATTGAACCAGCTTCTACAGTCCATGCAAAATGGTGATCCAGCTGGAATGGGCTATATTTACGCCTTCTCAATTTTTGTTGGAGTGGTCTTTGGGGTGTTATGTGAAGCTCAGTATTTTCAGAATGTCATGCGTGTTGGTTATCGTCTGAGATCAACACTGGTGGCTGCAGTATTTCGCAAGTCTCTAAGGCTTACCCATGAAGCACGAAAGCAATTTGCATCTGGAAAAATAACCAACTTGATGACTACTGATGCTGAGTCACTTCAGCAAATATGCCAATCACTTCACACTTTGTGGTCAGCTCCCTTTCGAATTACTATTGCTATGGTTCTTCTTTACAACGAACTAGGCGCTGCTTCCCTTATTGGTGCTTTGTTGCTAGTTCTCATGTTTCCATTACAGACATTAATCATCAGCAGAATGCAGAAGCTGTCTAAGGAAGGGTTGCAACGCACAGACAAGAGAATTAGTCTCATGAATGAAATTTTGGCTGCTATGGACACTGTAAAATGTTATGCATGGGAGAGTAGTTTCCAGTCTAAAGTATCAAATGTGCGAAATGACGAATTGTCATGGTTCCGAAAAGCATCATTACTTGGAGCGTGTAATTCATTTATCCTAAATAGCATTCCAGTTTTTGTAACTGTGATTTCCTTTGGAGTCTTCACCTTGCTCGGAGGGGATTTGACACCTGCAAGAGCTTTCACATCGCTTTCTCTGTTTGCTGTTCTTCGATTTCCTCTGTTCATGCTTCCTAATATTATAACTCAGGTGGTTAATGCAAATGTATCGTTGAAACGTCTGGAGGAGTTGCTCTTAGCTGAAGAGAGGATACTTCTACCAAATCCACCTCTTGAGCCAGGGTTACCAGCCATCTCAATCAAGAATGGAAACTTTTCTTGGGATGCAAAGGTAGAGAGGCCAACATTGTCAAACATAAATTTGGATATTCCTGTTGGTAGCCTAGTTGCTGTTGTTGGAAGCACAGGAGAAGGGAAGACATCACTCATATCTGCAATGCTTGGAGAGCTTCCTCCAATTGTGGATTCAACTGTTGTCATGAGAGGAACAGTTGCTTATGTACCTCAAGTTTCATGGATTTTTAATGCAACTGTACGGGATAACATTTTGTTTGGTTCTGCCTTTGACCCAATAAGATATGAAAGGGCAATAAATGTGACTGAACTGCAACACGACCTAGAGTTACTATCTGGCGGCGATCTTACTGAAATTGGTGAAAGAGGAGTAAACATCAGCGGTGGTCAGAAGCAAAGAGTATCCATGGCTAGAGCTGTCTACTCCAATTCTGACGTGCTCGTTTTTGATGACCCCCTAAGTGCTCTGGATGCACATGTGGCTAGACAGGTTTTTGATAAATGTATCAAGGGAGAATTGAGAGGGAAGACTCGAGTTCTTGTTACAAATCAGCTGCATTTCCTTTCACAAGTTGATAGAATCATTTTGGTCCATGAAGGTATGGTGAAGGAGGAAGGGACTTTTGAAGAGCTCTCTAGCCAGGGGGTTTTCTTCCAGAGGCTGATGGAAAATGCAGGAAAAATGGAAGAGTACGTAGAAGAAAAGGTAGATATTGAAGATACTGATCAAAAGTCCTCTTCAAAACCAGTGGTCAATGGAGCAGTTAATGATAATTCAAAGAGTGAAAGTAAACCCAAAGGAGGAAAGTCTATCCTTATTAAAAAAGAAGAACGGGAAACAGGTGTTGTCAGTTTGAATGTTCTAATCAGGTACAAAAATGCATTAGGAGGCGCTTGGGTTGTTCTAGTACTATTTGGGTGCTATTTCTCAACTGAAGCATTACGAGTGTCAAGTAGCACATGGTTAAGCCACTGGACTGATCAGAGTACTGTAGAGGGTTATAATCCAGGTTTCTACAATCTCATATATGCAGCTCTATCATTTTGTCAGGTTTTGGTGACTCTAACAAATTCTTACTGGTTAATCATATCAAGTCTTTATGCTGCCAGAAGGTTACACGAAGCCATGCTTCACTCCATCTTACGGGCTCCCATGGTTTTTTTCCACACAAATCCACTCGGAAGGGTCATCAACAGATTTGCAAAAGATCTAGGTGACATTGATCGTAATGTGGCTCCATTTGTGAGCATGTTTTTAGGTCAAATATCCCAACTTCTTTCGACCTTCATCCTGATAGGGATTGTAAGCACAATGTCCCTGTGGGCAATAATGCCATTGTTGGTATTATTCTATGGAGCATATCTATACTACCAGAGCACCGCTCGTGAGGTAAAGCGATTGGATTCAGTTAGCAGATCTCCTGTTTATGCACAATTTGGGGAAGCGCTAAATGGTCTATCAACAATTCGTGCTTACAAAGCTTATGATCGAATGGCCGATATAAATGGGAGATCCATGGACAACAACATTCGGTTCACGCTGGTGAACATAAGCGGAAACCGATGGCTTGCAATCCGATTGGAAACCCTAGGAGGCCTCATGATATGGTTTACTGCAACCTTCGCCGTGATGCAGAATGGCAGGGCAGATAATCAGCAAGAATTTGCATCCACCATGGGATTACTTCTCAGTTACGCTTTGAATATTACCAGCTTGCTCACTGGTGTGCTCAGACTTGCAAGTTTGGCTGAGAATAGTTTAAATTCAGTTGAGCGGATTGGAACTTACATTGATTTGCCTTCAGAAGCTCCTTCTGTGATTGACCATAATCGCCCTCCCCCTGGGTGGCCTTCCTCGGGCTCCATCAAATTCGAAGAAGCTGTTCTTCGCTACAGGCCGGAACTTCCTCCTGTGCTTCATGGCCTATCTTTCAATATTTCTCCAAGCGATAAGGTTGGCATTGTTGGGAGGACTGGCGCAGGAAAATCCAGCATGCTAAATGCCCTGTTTCGAATCGTGGAATTGGAAAAAGGGAGAATATTAATTGATGATTATGATATTGCAAAGTTTGGGCTTGCTGATTTGCGGAAAGTTCTTGGCATTATACCACAATCTCCTGTTCTCTTTTCGGGAACCGTGAGATTTAATCTTGATCCATTTACTGAACACAATGATGCTGACCTCTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTGATACGGAGGAATTCTTTGGGTCTGGATGCCGAGGTATCTGAGGCAGGCGAGAACTTCAGTGTAGGACAAAGGCAACTGTTGAGTCTTGCCAGGGCTTTGTTGCGGAGATCAAAGATTTTAGTACTTGATGAGGCAACTGCTGCAGTGGATGTTAGAACAGATGCACTCATACAGAAAACAATCAGAGAGGAATTTAAATCCTGTACAATGCTCATTATTGCTCATCGCCTCAACACCATTATTGATTGTGATCGGATTCTTTTGCTCGATGGAGGCAAGGTTCTTGAGTATGATACCCCAGAGGAGCTGCTGGCAAATGAGGGTAGTGCTTTCTCTAAGATGGTGCAAAGTACAGGAGCTGCAAATGCCCAATACTTACGCAGCTTAGTACATGGCGGGGACAAGACAGAAAGAGAGGAGAACAAACATCTGGATGGTCACAAAAAATGGCTAGCTTCTTCTCGGTGGGCTGCTGCAGCCCAGTATGCTCTTGCTGTCAGTCTCACTTCGTCCCAGAATGACCTACAACGGTTGGAAGTAGAAGATGATAATAGTATTCTCAAAAAGACAAAGGATGCTCTGCTAACTTTGCAGGGTGTTTTGGAAAGGAAGCATGATAAAGAAATTGAGGAATCTTTAAACCAACGCCAAATATCCTCTGATGGATGGTGGTCATCGCTTTACAAGATGATTGAAGGTCTTGCTATGATGAGCAGATTGGCCAGGAACAGGCTCCACCATTCAGACTACGGTTTTGAGGACAGATCAATTGACTTCGATCAAATCGATATCTAG 4866 0.426 MAFKPAVWYCRPVENGVWTRTVQNAFGAYTPCAVNNLVIGISHLVILGLCIYRIWLIKKDSKVKRFCLRSNIYNYVLGILAAYSVAEPLYRLIMGVSVLNLDGQSQLAPFEITSLIVEAFAWCSMLILLGIETKVYIYEFRWFVRFGLIYAIVGEAVMFNFVISVQQLYSRSVLYLYISEVICQVLFGVLLLVYVPTLDPYPGYTPIGTEVDADADAAYEELPEGELICPERRASLLSRILFSWMNPIMKLGYERPLTEKDIWKLDTWERTEELNNKFQKCWAKESQKPKPWLLKALNASLGGRFWWGGIFKIGNDLSQFTGPLILNQLLQSMQNGDPAGMGYIYAFSIFVGVVFGVLCEAQYFQNVMRVGYRLRSTLVAAVFRKSLRLTHEARKQFASGKITNLMTTDAESLQQICQSLHTLWSAPFRITIAMVLLYNELGAASLIGALLLVLMFPLQTLIISRMQKLSKEGLQRTDKRISLMNEILAAMDTVKCYAWESSFQSKVSNVRNDELSWFRKASLLGACNSFILNSIPVFVTVISFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNANVSLKRLEELLLAEERILLPNPPLEPGLPAISIKNGNFSWDAKVERPTLSNINLDIPVGSLVAVVGSTGEGKTSLISAMLGELPPIVDSTVVMRGTVAYVPQVSWIFNATVRDNILFGSAFDPIRYERAINVTELQHDLELLSGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVLVFDDPLSALDAHVARQVFDKCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEELSSQGVFFQRLMENAGKMEEYVEEKVDIEDTDQKSSSKPVVNGAVNDNSKSESKPKGGKSILIKKEERETGVVSLNVLIRYKNALGGAWVVLVLFGCYFSTEALRVSSSTWLSHWTDQSTVEGYNPGFYNLIYAALSFCQVLVTLTNSYWLIISSLYAARRLHEAMLHSILRAPMVFFHTNPLGRVINRFAKDLGDIDRNVAPFVSMFLGQISQLLSTFILIGIVSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSVSRSPVYAQFGEALNGLSTIRAYKAYDRMADINGRSMDNNIRFTLVNISGNRWLAIRLETLGGLMIWFTATFAVMQNGRADNQQEFASTMGLLLSYALNITSLLTGVLRLASLAENSLNSVERIGTYIDLPSEAPSVIDHNRPPPGWPSSGSIKFEEAVLRYRPELPPVLHGLSFNISPSDKVGIVGRTGAGKSSMLNALFRIVELEKGRILIDDYDIAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFTEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLANEGSAFSKMVQSTGAANAQYLRSLVHGGDKTEREENKHLDGHKKWLASSRWAAAAQYALAVSLTSSQNDLQRLEVEDDNSILKKTKDALLTLQGVLERKHDKEIEESLNQRQISSDGWWSSLYKMIEGLAMMSRLARNRLHHSDYGFEDRSIDFDQIDI* 1622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4310 1621 Gene3D ABC transporter type 1, transmembrane domain 883 1220 IPR036640 GO:0005524|GO:0016021
Psa1g4310 1621 Gene3D ABC transporter type 1, transmembrane domain 272 603 IPR036640 GO:0005524|GO:0016021
Psa1g4310 1621 SUPERFAMILY ABC transporter transmembrane region 916 1219 IPR036640 GO:0005524|GO:0016021
Psa1g4310 1621 SMART AAA_5 1265 1458 IPR003593 -
Psa1g4310 1621 SMART AAA_5 644 822 IPR003593 -
Psa1g4310 1621 PANTHER ABC TRANSPORTER C FAMILY MEMBER 1 33 1512 - -
Psa1g4310 1621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1229 1470 IPR027417 -
Psa1g4310 1621 Pfam ABC transporter 635 770 IPR003439 GO:0005524
Psa1g4310 1621 Pfam ABC transporter 1256 1404 IPR003439 GO:0005524
Psa1g4310 1621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 619 841 IPR003439 GO:0005524
Psa1g4310 1621 Gene3D - 612 866 IPR027417 -
Psa1g4310 1621 CDD ABC_6TM_ABCC_D2 918 1214 IPR044726 GO:0140359
Psa1g4310 1621 ProSitePatterns ABC transporters family signature. 743 757 IPR017871 GO:0005524
Psa1g4310 1621 CDD ABCC_MRP_domain1 617 817 - -
Psa1g4310 1621 Pfam ABC transporter transmembrane region 308 573 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g4310 1621 Pfam ABC transporter transmembrane region 919 1161 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g4310 1621 MobiDBLite consensus disorder prediction 853 887 - -
Psa1g4310 1621 CDD ABCC_MRP_domain2 1237 1457 - -
Psa1g4310 1621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 840 IPR027417 -
Psa1g4310 1621 Gene3D - 1222 1475 IPR027417 -
Psa1g4310 1621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1239 1473 IPR003439 GO:0005524
Psa1g4310 1621 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 919 1202 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g4310 1621 ProSitePatterns ABC transporters family signature. 1376 1390 IPR017871 GO:0005524
Psa1g4310 1621 MobiDBLite consensus disorder prediction 862 878 - -
Psa1g4310 1621 CDD ABC_6TM_ABCC_D1 307 589 IPR044746 GO:0140359
Psa1g4310 1621 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 585 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g4310 1621 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 33 1512 - -
Psa1g4310 1621 SUPERFAMILY ABC transporter transmembrane region 289 597 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4310 Psa-Chr1 339825751 339842151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4310 1249 1479 Calmodulin-binding Proteins AT2G36910 32.340 1.29e-29 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4310 - - gmx:100795004 2806.55