Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g4308 ATGGAGGATGAGATTCAAGCATGTAAGTTTCCGAGACTCGGAAATGTTGTAAACAACTTAAGCAATTCAAGCATCAAGAGTTTAGGTTCTGGTAGAAGGAAGAATGTTGGAGGAATTATTGGAAGTGATTTTCAGAGAAGTTGGCAGGAGCGGCAGCAGGAGGAAGAGAACTCTTCGAGAATCGTTAGAGTGTCGAGAGGCTCCGGTGGAAAAGATAGACACAGCAAAGTGATGACTTCGAAGGGTTTACGAGATAGAAGAGTTAGGCTATCGGTTACGACGGCTATTCAGTTCTATGATCTTCAAGATAGACTTGGTTATGATCAACCGAGTAAAGCGGTTGATTGGTTAATCAAAGCCGCTTCGGATTCTATCTCGGAGCTACCTTCTCTCAATAACGCGTTCGCTCAAATTGATGTTGATGCGAAGAGCGATGAGAAAAACATACAACCAGATTTTGAGTTTGATGATGAAAGACTGAACAAGAATCTTTGTTTGTCTAAGTCTGCTTGTAGCAGTACTTCTGAGACGAGTAAAGAAAATGAGTCTAGCATTGCACAACATCAACATCAGCATCAGCATCAACATCATCAAAACATGTCTCATACAGCTTCGTTTACTGAGTTACTCACCGGTGGAATTGGTAGTAGTAACAATGGATCAATTCATGATAACCAGATTCCTCATGGTGGTTTCTCAGGACATTCACCATTCAATAGTGAAAATGAAAACCAGTCAGATATGATTCAGCTGCAGCATTTTCCATTTATGTCTGAGCAACATCTCATGCAACCATCCGTGGTGAATTCATCTTCATCGTCATCTTCTCATCATCAACATCAAAATGGGAGTCATGACAATTACAATCTCAACTTCACGATATCTTCTTCGGGCCTTGTTGGTTACAATAGGGGGACCCTTCAGTCCAATTCACTTTTGCCTCATTTCCAGAGGTTCTCAACCATGGATCATGGATCATCGACAACAACGTCATCGTCCAATAATCTACCTAGTTTCTTCACAGGAGCACCTGTTCCTCCTCCTCCTGTTGCTGCTGCTACTCCAACCATGGATCAACAACTTCATTTCTCACCTCTCTTTGACGCTCGTTTGCAACTTTTCTACCGCGATGGAACTGGAAGCCAGCATTCAGATCAGAAGAACAACAAATGCAATAAGAATTGA 1185 0.4194 MEDEIQACKFPRLGNVVNNLSNSSIKSLGSGRRKNVGGIIGSDFQRSWQERQQEEENSSRIVRVSRGSGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVDWLIKAASDSISELPSLNNAFAQIDVDAKSDEKNIQPDFEFDDERLNKNLCLSKSACSSTSETSKENESSIAQHQHQHQHQHHQNMSHTASFTELLTGGIGSSNNGSIHDNQIPHGGFSGHSPFNSENENQSDMIQLQHFPFMSEQHLMQPSVVNSSSSSSSHHQHQNGSHDNYNLNFTISSSGLVGYNRGTLQSNSLLPHFQRFSTMDHGSSTTTSSSNNLPSFFTGAPVPPPPVAAATPTMDQQLHFSPLFDARLQLFYRDGTGSQHSDQKNNKCNKN* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g4308 394 MobiDBLite consensus disorder prediction 51 80 - -
Psa1g4308 394 MobiDBLite consensus disorder prediction 265 286 - -
Psa1g4308 394 ProSiteProfiles TCP domain profile. 70 128 IPR017887 -
Psa1g4308 394 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 223 IPR005333 GO:0003700
Psa1g4308 394 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 239 388 IPR005333 GO:0003700
Psa1g4308 394 PANTHER TRANSCRIPTION FACTOR TCP24 2 223 - -
Psa1g4308 394 PANTHER TRANSCRIPTION FACTOR TCP24 239 388 - -
Psa1g4308 394 MobiDBLite consensus disorder prediction 175 201 - -
Psa1g4308 394 Pfam TCP family transcription factor 69 198 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g4308 Psa-Chr1 339783685 339787561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g4308 57 343 TCP Transcription Factor Family AT4G18390 39.080 1.03e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Psa1g4308 TCP 9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g4308 - - cam:101507434 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g4308 1 339783685 339787561 Psa1g4308 1 339783685 339787561 ECH